JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
BEST2_chr19_12746791_12763458	0/0	a0003	509	12	11	1	0	0	0	copy fasta	BEST2	chr19	12746791	12763458
BEST2_chr19_12746791_12763458	0/0	a0004	509	7	7	0	0	0	0	copy fasta	BEST2	chr19	12746791	12763458
BEST2_chr19_12746791_12763458	0/0	a0005	509	4	0	1	0	3	0	copy fasta	BEST2	chr19	12746791	12763458
BEST2_chr19_12746791_12763458	0/0	a0006	509	4	0	0	4	0	0	copy fasta	BEST2	chr19	12746791	12763458
BEST2_chr19_12746791_12763458	0/0	a0007	509	1	0	0	1	0	0	copy fasta	BEST2	chr19	12746791	12763458
BEST2_chr19_12746791_12763458	0/0	a0008	509	1	0	1	0	0	0	copy fasta	BEST2	chr19	12746791	12763458
BEST2_chr19_12746791_12763458	0/0	a0009	509	1	0	1	0	0	0	copy fasta	BEST2	chr19	12746791	12763458
BEST2_chr19_12746791_12763458	0/0	a0010	509	1	0	0	1	0	0	copy fasta	BEST2	chr19	12746791	12763458
BEST2_chr19_12746791_12763458	0/0	a0011	509	1	0	0	1	0	0	copy fasta	BEST2	chr19	12746791	12763458
BEST2_chr19_12746791_12763458	0/0	a0012	509	1	0	0	1	0	0	copy fasta	BEST2	chr19	12746791	12763458
BEST3_chr12_69648609_69704303	1/1	a0001	668	322	77	60	136	18	29	copy fasta	BEST3	chr12	69648609	69704303
BEST3_chr12_69648609_69704303	0/0	a0002	668	19	1	4	7	0	7	copy fasta	BEST3	chr12	69648609	69704303
BEST3_chr12_69648609_69704303	0/0	a0003	668	16	9	4	1	0	2	copy fasta	BEST3	chr12	69648609	69704303
BEST3_chr12_69648609_69704303	0/0	a0004	668	4	4	0	0	0	0	copy fasta	BEST3	chr12	69648609	69704303
BEST3_chr12_69648609_69704303	0/0	a0005	668	1	1	0	0	0	0	copy fasta	BEST3	chr12	69648609	69704303
BEST3_chr12_69648609_69704303	0/0	a0006	668	1	0	0	0	0	1	copy fasta	BEST3	chr12	69648609	69704303
BEST3_chr12_69648609_69704303	0/0	a0007	668	1	0	0	0	0	1	copy fasta	BEST3	chr12	69648609	69704303
BEST3_chr12_69648609_69704303	0/0	a0008	668	1	0	0	1	0	0	copy fasta	BEST3	chr12	69648609	69704303
BEST3_chr12_69648609_69704303	0/0	a0009	668	1	0	0	1	0	0	copy fasta	BEST3	chr12	69648609	69704303
BEST4_chr1_44778585_44793170	1/1	a0001	473	324	83	58	134	9	38	copy fasta	BEST4	chr1	44778585	44793170
BEST4_chr1_44778585_44793170	0/0	a0002	473	63	6	9	35	5	8	copy fasta	BEST4	chr1	44778585	44793170
BEST4_chr1_44778585_44793170	0/0	a0003	473	1	1	0	0	0	0	copy fasta	BEST4	chr1	44778585	44793170
BEST4_chr1_44778585_44793170	0/0	a0004	473	1	0	1	0	0	0	copy fasta	BEST4	chr1	44778585	44793170
BEST4_chr1_44778585_44793170	0/0	a0005	473	1	0	0	1	0	0	copy fasta	BEST4	chr1	44778585	44793170
BET1L_chr11_197924_212399	1/1	a0001	111	401	96	76	171	12	44	copy fasta	BET1L	chr11	197924	212399
BET1L_chr11_197924_212399	0/0	a0002	111	1	0	0	1	0	0	copy fasta	BET1L	chr11	197924	212399
BET1_chr7_93988245_94009355	1/1	a0001	118	404	92	64	190	12	44	copy fasta	BET1	chr7	93988245	94009355
BEX1_chrX_103057651_103069171	1/1	a0001	125	338	76	63	162	11	24	copy fasta	BEX1	chrX	103057651	103069171
BEX1_chrX_103057651_103069171	0/0	a0002	65	1	0	0	1	0	0	copy fasta	BEX1	chrX	103057651	103069171
BEX2_chrX_103304346_103315990	1/1	a0001	128	299	63	54	137	11	32	copy fasta	BEX2	chrX	103304346	103315990
BEX2_chrX_103304346_103315990	0/0	a0002	128	4	4	0	0	0	0	copy fasta	BEX2	chrX	103304346	103315990
BEX2_chrX_103304346_103315990	0/0	a0003	128	3	2	1	0	0	0	copy fasta	BEX2	chrX	103304346	103315990
BEX2_chrX_103304346_103315990	0/0	a0004	128	1	1	0	0	0	0	copy fasta	BEX2	chrX	103304346	103315990
BEX2_chrX_103304346_103315990	0/0	a0005	68	1	0	0	1	0	0	copy fasta	BEX2	chrX	103304346	103315990
BEX3_chrX_103371538_103383164	1/1	a0001	101	297	70	51	135	7	32	copy fasta	BEX3	chrX	103371538	103383164
BEX3_chrX_103371538_103383164	0/0	a0002	63	1	0	0	1	0	0	copy fasta	BEX3	chrX	103371538	103383164
BEX4_chrX_103210108_103222246	1/1	a0001	120	333	78	59	155	9	30	copy fasta	BEX4	chrX	103210108	103222246
BEX4_chrX_103210108_103222246	0/0	a0002	120	1	0	0	0	0	1	copy fasta	BEX4	chrX	103210108	103222246
BEX5_chrX_102148712_102160977	1/1	a0001	111	324	76	57	144	11	34	copy fasta	BEX5	chrX	102148712	102160977
BFAR_chr16_14627951_14674236	0/0	a0001	450	227	69	36	88	12	22	copy fasta	BFAR	chr16	14627951	14674236
BFAR_chr16_14627951_14674236	0/1	a0002	450	81	9	23	32	4	12	copy fasta	BFAR	chr16	14627951	14674236
BFAR_chr16_14627951_14674236	0/0	a0003	450	3	3	0	0	0	0	copy fasta	BFAR	chr16	14627951	14674236
BFAR_chr16_14627951_14674236	0/0	a0004	450	2	0	0	2	0	0	copy fasta	BFAR	chr16	14627951	14674236
BFAR_chr16_14627951_14674236	0/0	a0005	450	2	0	2	0	0	0	copy fasta	BFAR	chr16	14627951	14674236
BFAR_chr16_14627951_14674236	0/0	a0006	450	1	1	0	0	0	0	copy fasta	BFAR	chr16	14627951	14674236
BFAR_chr16_14627951_14674236	0/0	a0007	450	1	0	1	0	0	0	copy fasta	BFAR	chr16	14627951	14674236
BFSP1_chr20_17488905_17536379	1/1	a0001	665	259	69	49	106	8	25	copy fasta	BFSP1	chr20	17488905	17536379
BFSP1_chr20_17488905_17536379	0/0	a0002	665	112	10	21	64	2	15	copy fasta	BFSP1	chr20	17488905	17536379
BFSP1_chr20_17488905_17536379	0/0	a0003	665	7	7	0	0	0	0	copy fasta	BFSP1	chr20	17488905	17536379
BFSP1_chr20_17488905_17536379	0/0	a0004	665	4	2	2	0	0	0	copy fasta	BFSP1	chr20	17488905	17536379