JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TFF2_chr21_42341357_42355994	0/0	a0003	129	1	0	1	0	0	0	copy fasta	TFF2	chr21	42341357	42355994
TFF2_chr21_42341357_42355994	0/0	a0004	129	1	1	0	0	0	0	copy fasta	TFF2	chr21	42341357	42355994
TFF2_chr21_42341357_42355994	0/0	a0005	129	1	1	0	0	0	0	copy fasta	TFF2	chr21	42341357	42355994
TFF3_chr21_42306667_42320409	1/1	a0001	80	450	95	85	202	18	48	copy fasta	TFF3	chr21	42306667	42320409
TFF3_chr21_42306667_42320409	0/0	a0002	80	1	0	1	0	0	0	copy fasta	TFF3	chr21	42306667	42320409
TFF3_chr21_42306667_42320409	0/0	a0003	80	1	1	0	0	0	0	copy fasta	TFF3	chr21	42306667	42320409
TFG_chr3_100704494_100753964	1/1	a0001	400	349	87	64	148	16	32	copy fasta	TFG	chr3	100704494	100753964
TFG_chr3_100704494_100753964	0/0	a0002	400	1	1	0	0	0	0	copy fasta	TFG	chr3	100704494	100753964
TFIP11_chr22_26486240_26517473	1/1	a0001	837	405	86	72	193	14	38	copy fasta	TFIP11	chr22	26486240	26517473
TFIP11_chr22_26486240_26517473	0/0	a0002	837	4	4	0	0	0	0	copy fasta	TFIP11	chr22	26486240	26517473
TFIP11_chr22_26486240_26517473	0/0	a0003	837	2	0	0	2	0	0	copy fasta	TFIP11	chr22	26486240	26517473
TFIP11_chr22_26486240_26517473	0/0	a0004	837	2	0	0	2	0	0	copy fasta	TFIP11	chr22	26486240	26517473
TFIP11_chr22_26486240_26517473	0/0	a0005	837	1	0	1	0	0	0	copy fasta	TFIP11	chr22	26486240	26517473
TFIP11_chr22_26486240_26517473	0/0	a0006	837	1	0	1	0	0	0	copy fasta	TFIP11	chr22	26486240	26517473
TFIP11_chr22_26486240_26517473	0/0	a0007	837	1	1	0	0	0	0	copy fasta	TFIP11	chr22	26486240	26517473
TFIP11_chr22_26486240_26517473	0/0	a0008	837	1	1	0	0	0	0	copy fasta	TFIP11	chr22	26486240	26517473
TFIP11_chr22_26486240_26517473	0/0	a0009	837	1	0	0	1	0	0	copy fasta	TFIP11	chr22	26486240	26517473
TFIP11_chr22_26486240_26517473	0/0	a0010	837	1	0	0	1	0	0	copy fasta	TFIP11	chr22	26486240	26517473
TFIP11_chr22_26486240_26517473	0/0	a0011	837	1	0	0	1	0	0	copy fasta	TFIP11	chr22	26486240	26517473
TFPI2_chr7_93880396_93895753	1/1	a0001	235	425	84	67	211	14	47	copy fasta	TFPI2	chr7	93880396	93895753
TFPI2_chr7_93880396_93895753	0/0	a0002	235	1	1	0	0	0	0	copy fasta	TFPI2	chr7	93880396	93895753
TFPI2_chr7_93880396_93895753	0/0	a0003	235	1	0	0	1	0	0	copy fasta	TFPI2	chr7	93880396	93895753
TFPI2_chr7_93880396_93895753	0/0	a0004	235	1	1	0	0	0	0	copy fasta	TFPI2	chr7	93880396	93895753
TFPI2_chr7_93880396_93895753	0/0	a0005	235	1	0	1	0	0	0	copy fasta	TFPI2	chr7	93880396	93895753
TFPI2_chr7_93880396_93895753	0/0	a0006	235	1	0	0	0	0	1	copy fasta	TFPI2	chr7	93880396	93895753
TFPI_chr2_187459230_187559435	1/1	a0001	304	340	90	56	151	7	34	copy fasta	TFPI	chr2	187459230	187559435
TFPI_chr2_187459230_187559435	0/0	a0002	304	2	0	0	2	0	0	copy fasta	TFPI	chr2	187459230	187559435
TFPI_chr2_187459230_187559435	0/0	a0003	304	1	0	0	0	1	0	copy fasta	TFPI	chr2	187459230	187559435
TFPI_chr2_187459230_187559435	0/0	a0004	304	1	0	0	1	0	0	copy fasta	TFPI	chr2	187459230	187559435
TFPT_chr19_54102020_54120657	0/1	a0001	253	424	94	86	192	12	39	copy fasta	TFPT	chr19	54102020	54120657
TFPT_chr19_54102020_54120657	0/0	a0002	253	3	3	0	0	0	0	copy fasta	TFPT	chr19	54102020	54120657
TFPT_chr19_54102020_54120657	0/0	a0003	253	1	1	0	0	0	0	copy fasta	TFPT	chr19	54102020	54120657
TFPT_chr19_54102020_54120657	0/0	a0004	253	1	0	0	0	0	1	copy fasta	TFPT	chr19	54102020	54120657
TFR2_chr7_100615420_100646552	1/1	a0001	801	298	77	53	116	13	37	copy fasta	TFR2	chr7	100615420	100646552
TFR2_chr7_100615420_100646552	0/0	a0002	801	21	11	0	8	0	2	copy fasta	TFR2	chr7	100615420	100646552
TFR2_chr7_100615420_100646552	0/0	a0003	801	3	0	2	0	1	0	copy fasta	TFR2	chr7	100615420	100646552
TFR2_chr7_100615420_100646552	0/0	a0004	801	2	2	0	0	0	0	copy fasta	TFR2	chr7	100615420	100646552
TFR2_chr7_100615420_100646552	0/0	a0005	801	2	2	0	0	0	0	copy fasta	TFR2	chr7	100615420	100646552
TFR2_chr7_100615420_100646552	0/0	a0006	801	2	0	0	2	0	0	copy fasta	TFR2	chr7	100615420	100646552
TFR2_chr7_100615420_100646552	0/0	a0007	12	1	1	0	0	0	0	copy fasta	TFR2	chr7	100615420	100646552
TFR2_chr7_100615420_100646552	0/0	a0008	801	1	0	0	1	0	0	copy fasta	TFR2	chr7	100615420	100646552
TFR2_chr7_100615420_100646552	0/0	a0009	801	1	0	0	1	0	0	copy fasta	TFR2	chr7	100615420	100646552
TFR2_chr7_100615420_100646552	0/0	a0010	801	1	0	0	1	0	0	copy fasta	TFR2	chr7	100615420	100646552
TFR2_chr7_100615420_100646552	0/0	a0011	801	1	1	0	0	0	0	copy fasta	TFR2	chr7	100615420	100646552
TFR2_chr7_100615420_100646552	0/0	a0012	801	1	0	0	0	0	1	copy fasta	TFR2	chr7	100615420	100646552
TFR2_chr7_100615420_100646552	0/0	a0013	801	1	0	1	0	0	0	copy fasta	TFR2	chr7	100615420	100646552
TFR2_chr7_100615420_100646552	0/0	a0014	801	1	0	0	1	0	0	copy fasta	TFR2	chr7	100615420	100646552
TFRC_chr3_196044284_196087090	1/0	a0001	760	273	78	42	115	8	29	copy fasta	TFRC	chr3	196044284	196087090
TFRC_chr3_196044284_196087090	0/1	a0002	760	97	9	31	31	4	21	copy fasta	TFRC	chr3	196044284	196087090
TFRC_chr3_196044284_196087090	0/0	a0003	760	4	4	0	0	0	0	copy fasta	TFRC	chr3	196044284	196087090