JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TFRC_chr3_196044284_196087090	0/0	a0004	760	3	0	0	3	0	0	copy fasta	TFRC	chr3	196044284	196087090
TFRC_chr3_196044284_196087090	0/0	a0005	760	2	0	0	2	0	0	copy fasta	TFRC	chr3	196044284	196087090
TFRC_chr3_196044284_196087090	0/0	a0006	760	1	0	0	1	0	0	copy fasta	TFRC	chr3	196044284	196087090
TFRC_chr3_196044284_196087090	0/0	a0007	760	1	1	0	0	0	0	copy fasta	TFRC	chr3	196044284	196087090
TFRC_chr3_196044284_196087090	0/0	a0008	760	1	1	0	0	0	0	copy fasta	TFRC	chr3	196044284	196087090
TFRC_chr3_196044284_196087090	0/0	a0009	760	1	1	0	0	0	0	copy fasta	TFRC	chr3	196044284	196087090
TFRC_chr3_196044284_196087090	0/0	a0010	760	1	0	1	0	0	0	copy fasta	TFRC	chr3	196044284	196087090
TF_chr3_133741393_133801641	0/1	a0001	698	304	79	60	118	15	31	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	a0002	698	70	9	10	40	1	10	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	a0003	698	12	0	5	0	2	5	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	a0004	698	5	0	0	5	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	a0005	698	5	5	0	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	1/0	a0006	698	4	0	3	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	a0007	698	1	0	0	1	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	a0008	698	1	1	0	0	0	0	copy fasta	TF	chr3	133741393	133801641
TGDS_chr13_94569054_94601152	1/1	a0001	350	373	91	70	154	12	44	copy fasta	TGDS	chr13	94569054	94601152
TGDS_chr13_94569054_94601152	0/0	a0002	350	1	1	0	0	0	0	copy fasta	TGDS	chr13	94569054	94601152
TGFA_chr2_70442284_70558826	1/1	a0001	160	333	84	66	139	8	34	copy fasta	TGFA	chr2	70442284	70558826
TGFA_chr2_70442284_70558826	0/0	a0002	160	6	6	0	0	0	0	copy fasta	TGFA	chr2	70442284	70558826
TGFA_chr2_70442284_70558826	0/0	a0003	160	5	0	0	5	0	0	copy fasta	TGFA	chr2	70442284	70558826
TGFB1I1_chr16_31467152_31482958	1/1	a0001	461	396	85	65	178	16	50	copy fasta	TGFB1I1	chr16	31467152	31482958
TGFB1I1_chr16_31467152_31482958	0/0	a0002	461	12	12	0	0	0	0	copy fasta	TGFB1I1	chr16	31467152	31482958
TGFB1I1_chr16_31467152_31482958	0/0	a0003	461	1	1	0	0	0	0	copy fasta	TGFB1I1	chr16	31467152	31482958
TGFB1I1_chr16_31467152_31482958	0/0	a0004	461	1	0	1	0	0	0	copy fasta	TGFB1I1	chr16	31467152	31482958
TGFB1_chr19_41325323_41358922	0/1	a0001	390	196	44	37	72	12	30	copy fasta	TGFB1	chr19	41325323	41358922
TGFB1_chr19_41325323_41358922	1/0	a0002	390	157	45	31	61	4	15	copy fasta	TGFB1	chr19	41325323	41358922
TGFB1_chr19_41325323_41358922	0/0	a0003	390	13	6	4	0	1	2	copy fasta	TGFB1	chr19	41325323	41358922
TGFB1_chr19_41325323_41358922	0/0	a0004	390	2	0	1	0	1	0	copy fasta	TGFB1	chr19	41325323	41358922
TGFB1_chr19_41325323_41358922	0/0	a0005	170	1	1	0	0	0	0	copy fasta	TGFB1	chr19	41325323	41358922
TGFB1_chr19_41325323_41358922	0/0	a0006	390	1	0	1	0	0	0	copy fasta	TGFB1	chr19	41325323	41358922
TGFB1_chr19_41325323_41358922	0/0	a0007	390	1	0	0	1	0	0	copy fasta	TGFB1	chr19	41325323	41358922
TGFB1_chr19_41325323_41358922	0/0	a0008	390	1	0	0	0	0	1	copy fasta	TGFB1	chr19	41325323	41358922
TGFB2_chr1_218340336_218449619	1/1	a0001	414	288	82	47	121	6	30	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	a0002	414	1	0	1	0	0	0	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	a0003	414	1	0	0	1	0	0	copy fasta	TGFB2	chr1	218340336	218449619
TGFB3_chr14_75953097_75986995	1/1	a0001	412	377	94	72	165	8	36	copy fasta	TGFB3	chr14	75953097	75986995
TGFB3_chr14_75953097_75986995	0/0	a0002	412	1	0	0	1	0	0	copy fasta	TGFB3	chr14	75953097	75986995
TGFBI_chr5_136023988_136068818	1/1	a0001	683	393	89	58	188	16	40	copy fasta	TGFBI	chr5	136023988	136068818
TGFBI_chr5_136023988_136068818	0/0	a0002	683	4	4	0	0	0	0	copy fasta	TGFBI	chr5	136023988	136068818
TGFBI_chr5_136023988_136068818	0/0	a0003	683	3	0	0	3	0	0	copy fasta	TGFBI	chr5	136023988	136068818
TGFBI_chr5_136023988_136068818	0/0	a0004	683	1	0	0	0	0	1	copy fasta	TGFBI	chr5	136023988	136068818
TGFBI_chr5_136023988_136068818	0/0	a0005	649	1	1	0	0	0	0	copy fasta	TGFBI	chr5	136023988	136068818
TGFBI_chr5_136023988_136068818	0/0	a0006	683	1	0	0	0	0	1	copy fasta	TGFBI	chr5	136023988	136068818
TGFBI_chr5_136023988_136068818	0/0	a0007	683	1	0	0	1	0	0	copy fasta	TGFBI	chr5	136023988	136068818
TGFBR1_chr9_99100113_99159192	1/1	a0001	503	348	65	61	170	10	40	copy fasta	TGFBR1	chr9	99100113	99159192
TGFBR1_chr9_99100113_99159192	0/0	a0002	500	12	7	1	0	4	0	copy fasta	TGFBR1	chr9	99100113	99159192
TGFBR1_chr9_99100113_99159192	0/0	a0003	503	1	0	0	1	0	0	copy fasta	TGFBR1	chr9	99100113	99159192
TGFBR1_chr9_99100113_99159192	0/0	a0004	499	1	0	0	1	0	0	copy fasta	TGFBR1	chr9	99100113	99159192
TGFBR2_chr3_30601601_30699142	1/1	a0001	567	379	93	68	154	18	44	copy fasta	TGFBR2	chr3	30601601	30699142
TGFBR2_chr3_30601601_30699142	0/0	a0002	567	6	0	0	6	0	0	copy fasta	TGFBR2	chr3	30601601	30699142