JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TGM1_chr14_24244114_24268177	0/0	a0014	817	1	1	0	0	0	0	copy fasta	TGM1	chr14	24244114	24268177
TGM1_chr14_24244114_24268177	0/0	a0015	817	1	0	1	0	0	0	copy fasta	TGM1	chr14	24244114	24268177
TGM1_chr14_24244114_24268177	0/0	a0016	817	1	1	0	0	0	0	copy fasta	TGM1	chr14	24244114	24268177
TGM1_chr14_24244114_24268177	0/0	a0017	180	1	0	0	1	0	0	copy fasta	TGM1	chr14	24244114	24268177
TGM1_chr14_24244114_24268177	0/0	a0018	817	1	0	0	1	0	0	copy fasta	TGM1	chr14	24244114	24268177
TGM1_chr14_24244114_24268177	0/0	a0019	817	1	0	0	1	0	0	copy fasta	TGM1	chr14	24244114	24268177
TGM1_chr14_24244114_24268177	0/0	a0020	817	1	0	0	0	1	0	copy fasta	TGM1	chr14	24244114	24268177
TGM2_chr20_38122385_38170270	1/1	a0001	687	340	92	61	134	16	35	copy fasta	TGM2	chr20	38122385	38170270
TGM2_chr20_38122385_38170270	0/0	a0002	687	6	0	1	5	0	0	copy fasta	TGM2	chr20	38122385	38170270
TGM2_chr20_38122385_38170270	0/0	a0003	687	2	0	0	2	0	0	copy fasta	TGM2	chr20	38122385	38170270
TGM2_chr20_38122385_38170270	0/0	a0004	687	2	1	0	1	0	0	copy fasta	TGM2	chr20	38122385	38170270
TGM2_chr20_38122385_38170270	0/0	a0005	687	2	2	0	0	0	0	copy fasta	TGM2	chr20	38122385	38170270
TGM2_chr20_38122385_38170270	0/0	a0006	687	1	0	0	1	0	0	copy fasta	TGM2	chr20	38122385	38170270
TGM2_chr20_38122385_38170270	0/0	a0007	687	1	0	0	1	0	0	copy fasta	TGM2	chr20	38122385	38170270
TGM2_chr20_38122385_38170270	0/0	a0008	687	1	0	0	1	0	0	copy fasta	TGM2	chr20	38122385	38170270
TGM2_chr20_38122385_38170270	0/0	a0009	687	1	0	0	1	0	0	copy fasta	TGM2	chr20	38122385	38170270
TGM2_chr20_38122385_38170270	0/0	a0010	687	1	1	0	0	0	0	copy fasta	TGM2	chr20	38122385	38170270
TGM2_chr20_38122385_38170270	0/0	a0011	687	1	0	0	1	0	0	copy fasta	TGM2	chr20	38122385	38170270
TGM2_chr20_38122385_38170270	0/0	a0012	687	1	0	0	0	0	1	copy fasta	TGM2	chr20	38122385	38170270
TGM2_chr20_38122385_38170270	0/0	a0013	687	1	0	0	1	0	0	copy fasta	TGM2	chr20	38122385	38170270
TGM3_chr20_2291001_2346079	0/0	a0001	693	186	20	31	108	6	21	copy fasta	TGM3	chr20	2291001	2346079
TGM3_chr20_2291001_2346079	0/0	a0002	693	41	2	15	11	3	10	copy fasta	TGM3	chr20	2291001	2346079
TGM3_chr20_2291001_2346079	0/0	a0003	693	32	13	5	12	0	2	copy fasta	TGM3	chr20	2291001	2346079
TGM3_chr20_2291001_2346079	0/0	a0004	693	31	28	3	0	0	0	copy fasta	TGM3	chr20	2291001	2346079
TGM3_chr20_2291001_2346079	0/1	a0005	693	21	11	0	6	0	3	copy fasta	TGM3	chr20	2291001	2346079
TGM3_chr20_2291001_2346079	0/0	a0006	693	15	4	5	4	0	2	copy fasta	TGM3	chr20	2291001	2346079
TGM3_chr20_2291001_2346079	1/0	a0007	693	15	2	6	1	3	2	copy fasta	TGM3	chr20	2291001	2346079
TGM3_chr20_2291001_2346079	0/0	a0008	693	3	0	3	0	0	0	copy fasta	TGM3	chr20	2291001	2346079
TGM3_chr20_2291001_2346079	0/0	a0009	693	3	1	1	0	0	1	copy fasta	TGM3	chr20	2291001	2346079
TGM3_chr20_2291001_2346079	0/0	a0010	693	2	1	1	0	0	0	copy fasta	TGM3	chr20	2291001	2346079
TGM3_chr20_2291001_2346079	0/0	a0011	693	2	2	0	0	0	0	copy fasta	TGM3	chr20	2291001	2346079
TGM3_chr20_2291001_2346079	0/0	a0012	693	1	0	0	1	0	0	copy fasta	TGM3	chr20	2291001	2346079
TGM3_chr20_2291001_2346079	0/0	a0013	693	1	1	0	0	0	0	copy fasta	TGM3	chr20	2291001	2346079
TGM3_chr20_2291001_2346079	0/0	a0014	693	1	0	0	0	0	1	copy fasta	TGM3	chr20	2291001	2346079
TGM3_chr20_2291001_2346079	0/0	a0015	693	1	1	0	0	0	0	copy fasta	TGM3	chr20	2291001	2346079
TGM3_chr20_2291001_2346079	0/0	a0016	693	1	0	0	1	0	0	copy fasta	TGM3	chr20	2291001	2346079
TGM3_chr20_2291001_2346079	0/0	a0017	693	1	1	0	0	0	0	copy fasta	TGM3	chr20	2291001	2346079
TGM3_chr20_2291001_2346079	0/0	a0018	693	1	1	0	0	0	0	copy fasta	TGM3	chr20	2291001	2346079
TGM3_chr20_2291001_2346079	0/0	a0019	693	1	1	0	0	0	0	copy fasta	TGM3	chr20	2291001	2346079
TGM3_chr20_2291001_2346079	0/0	a0020	693	1	1	0	0	0	0	copy fasta	TGM3	chr20	2291001	2346079
TGM4_chr3_44869608_44919990	0/0	a0001	684	86	9	18	43	2	14	copy fasta	TGM4	chr3	44869608	44919990
TGM4_chr3_44869608_44919990	1/1	a0002	684	84	18	28	20	7	9	copy fasta	TGM4	chr3	44869608	44919990
TGM4_chr3_44869608_44919990	0/0	a0003	684	36	10	5	9	1	11	copy fasta	TGM4	chr3	44869608	44919990
TGM4_chr3_44869608_44919990	0/0	a0004	684	31	4	13	8	4	2	copy fasta	TGM4	chr3	44869608	44919990
TGM4_chr3_44869608_44919990	0/0	a0005	684	15	12	2	0	0	1	copy fasta	TGM4	chr3	44869608	44919990
TGM4_chr3_44869608_44919990	0/0	a0006	684	8	8	0	0	0	0	copy fasta	TGM4	chr3	44869608	44919990
TGM4_chr3_44869608_44919990	0/0	a0007	684	7	7	0	0	0	0	copy fasta	TGM4	chr3	44869608	44919990
TGM4_chr3_44869608_44919990	0/0	a0008	684	7	4	2	0	1	0	copy fasta	TGM4	chr3	44869608	44919990
TGM4_chr3_44869608_44919990	0/0	a0009	684	6	0	0	6	0	0	copy fasta	TGM4	chr3	44869608	44919990
TGM4_chr3_44869608_44919990	0/0	a0010	684	6	5	0	1	0	0	copy fasta	TGM4	chr3	44869608	44919990