JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TGM4_chr3_44869608_44919990	0/0	a0011	684	5	4	0	0	1	0	copy fasta	TGM4	chr3	44869608	44919990
TGM4_chr3_44869608_44919990	0/0	a0012	684	4	4	0	0	0	0	copy fasta	TGM4	chr3	44869608	44919990
TGM4_chr3_44869608_44919990	0/0	a0013	684	2	0	0	2	0	0	copy fasta	TGM4	chr3	44869608	44919990
TGM4_chr3_44869608_44919990	0/0	a0014	684	2	0	2	0	0	0	copy fasta	TGM4	chr3	44869608	44919990
TGM4_chr3_44869608_44919990	0/0	a0015	684	2	1	1	0	0	0	copy fasta	TGM4	chr3	44869608	44919990
TGM4_chr3_44869608_44919990	0/0	a0016	684	2	2	0	0	0	0	copy fasta	TGM4	chr3	44869608	44919990
TGM4_chr3_44869608_44919990	0/0	a0017	684	1	1	0	0	0	0	copy fasta	TGM4	chr3	44869608	44919990
TGM4_chr3_44869608_44919990	0/0	a0018	684	1	0	0	1	0	0	copy fasta	TGM4	chr3	44869608	44919990
TGM4_chr3_44869608_44919990	0/0	a0019	268	1	0	1	0	0	0	copy fasta	TGM4	chr3	44869608	44919990
TGM4_chr3_44869608_44919990	0/0	a0020	684	1	0	0	1	0	0	copy fasta	TGM4	chr3	44869608	44919990
TGM4_chr3_44869608_44919990	0/0	a0021	684	1	1	0	0	0	0	copy fasta	TGM4	chr3	44869608	44919990
TGM4_chr3_44869608_44919990	0/0	a0022	684	1	1	0	0	0	0	copy fasta	TGM4	chr3	44869608	44919990
TGM4_chr3_44869608_44919990	0/0	a0023	684	1	0	0	1	0	0	copy fasta	TGM4	chr3	44869608	44919990
TGM4_chr3_44869608_44919990	0/0	a0024	684	1	1	0	0	0	0	copy fasta	TGM4	chr3	44869608	44919990
TGM4_chr3_44869608_44919990	0/0	a0025	268	1	0	0	0	0	1	copy fasta	TGM4	chr3	44869608	44919990
TGM4_chr3_44869608_44919990	0/0	a0026	684	1	1	0	0	0	0	copy fasta	TGM4	chr3	44869608	44919990
TGM4_chr3_44869608_44919990	0/0	a0027	684	1	1	0	0	0	0	copy fasta	TGM4	chr3	44869608	44919990
TGM5_chr15_43227590_43271928	1/1	a0001	720	210	42	47	77	14	28	copy fasta	TGM5	chr15	43227590	43271928
TGM5_chr15_43227590_43271928	0/0	a0002	720	66	28	7	26	0	5	copy fasta	TGM5	chr15	43227590	43271928
TGM5_chr15_43227590_43271928	0/0	a0003	720	18	0	0	18	0	0	copy fasta	TGM5	chr15	43227590	43271928
TGM5_chr15_43227590_43271928	0/0	a0004	720	17	11	0	6	0	0	copy fasta	TGM5	chr15	43227590	43271928
TGM5_chr15_43227590_43271928	0/0	a0005	720	8	0	0	8	0	0	copy fasta	TGM5	chr15	43227590	43271928
TGM5_chr15_43227590_43271928	0/0	a0006	720	4	4	0	0	0	0	copy fasta	TGM5	chr15	43227590	43271928
TGM5_chr15_43227590_43271928	0/0	a0007	720	4	3	1	0	0	0	copy fasta	TGM5	chr15	43227590	43271928
TGM5_chr15_43227590_43271928	0/0	a0008	720	3	0	0	3	0	0	copy fasta	TGM5	chr15	43227590	43271928
TGM5_chr15_43227590_43271928	0/0	a0009	720	2	0	0	2	0	0	copy fasta	TGM5	chr15	43227590	43271928
TGM5_chr15_43227590_43271928	0/0	a0010	720	1	0	1	0	0	0	copy fasta	TGM5	chr15	43227590	43271928
TGM5_chr15_43227590_43271928	0/0	a0011	720	1	0	0	0	0	1	copy fasta	TGM5	chr15	43227590	43271928
TGM6_chr20_2375901_2437753	0/1	a0001	706	306	67	62	118	16	42	copy fasta	TGM6	chr20	2375901	2437753
TGM6_chr20_2375901_2437753	1/0	a0002	706	81	2	7	66	0	5	copy fasta	TGM6	chr20	2375901	2437753
TGM6_chr20_2375901_2437753	0/0	a0003	706	11	11	0	0	0	0	copy fasta	TGM6	chr20	2375901	2437753
TGM6_chr20_2375901_2437753	0/0	a0004	706	3	3	0	0	0	0	copy fasta	TGM6	chr20	2375901	2437753
TGM6_chr20_2375901_2437753	0/0	a0005	706	3	2	1	0	0	0	copy fasta	TGM6	chr20	2375901	2437753
TGM6_chr20_2375901_2437753	0/0	a0006	706	1	0	0	1	0	0	copy fasta	TGM6	chr20	2375901	2437753
TGM6_chr20_2375901_2437753	0/0	a0007	706	1	0	0	1	0	0	copy fasta	TGM6	chr20	2375901	2437753
TGM6_chr20_2375901_2437753	0/0	a0008	706	1	0	0	1	0	0	copy fasta	TGM6	chr20	2375901	2437753
TGM6_chr20_2375901_2437753	0/0	a0009	706	1	0	0	1	0	0	copy fasta	TGM6	chr20	2375901	2437753
TGM6_chr20_2375901_2437753	0/0	a0010	706	1	0	0	0	0	1	copy fasta	TGM6	chr20	2375901	2437753
TGM6_chr20_2375901_2437753	0/0	a0011	706	1	1	0	0	0	0	copy fasta	TGM6	chr20	2375901	2437753
TGM6_chr20_2375901_2437753	0/0	a0012	706	1	1	0	0	0	0	copy fasta	TGM6	chr20	2375901	2437753
TGM6_chr20_2375901_2437753	0/0	a0013	706	1	0	1	0	0	0	copy fasta	TGM6	chr20	2375901	2437753
TGM6_chr20_2375901_2437753	0/0	a0014	706	1	1	0	0	0	0	copy fasta	TGM6	chr20	2375901	2437753
TGM6_chr20_2375901_2437753	0/0	a0015	706	1	0	0	0	0	1	copy fasta	TGM6	chr20	2375901	2437753
TGM6_chr20_2375901_2437753	0/0	a0016	706	1	0	1	0	0	0	copy fasta	TGM6	chr20	2375901	2437753
TGM6_chr20_2375901_2437753	0/0	a0017	706	1	0	0	0	0	1	copy fasta	TGM6	chr20	2375901	2437753
TGM6_chr20_2375901_2437753	0/0	a0018	706	1	1	0	0	0	0	copy fasta	TGM6	chr20	2375901	2437753
TGM6_chr20_2375901_2437753	0/0	a0019	706	1	1	0	0	0	0	copy fasta	TGM6	chr20	2375901	2437753
TGM6_chr20_2375901_2437753	0/0	a0020	706	1	1	0	0	0	0	copy fasta	TGM6	chr20	2375901	2437753
TGM6_chr20_2375901_2437753	0/0	a0021	706	1	1	0	0	0	0	copy fasta	TGM6	chr20	2375901	2437753
TGM7_chr15_43271271_43307255	0/0	a0001	710	319	79	49	143	12	36	copy fasta	TGM7	chr15	43271271	43307255