JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TGM7_chr15_43271271_43307255	0/0	a0002	710	10	0	0	10	0	0	copy fasta	TGM7	chr15	43271271	43307255
TGM7_chr15_43271271_43307255	0/0	a0003	710	4	0	2	1	0	1	copy fasta	TGM7	chr15	43271271	43307255
TGM7_chr15_43271271_43307255	0/0	a0004	710	2	0	0	2	0	0	copy fasta	TGM7	chr15	43271271	43307255
TGM7_chr15_43271271_43307255	0/0	a0005	710	1	0	0	0	0	1	copy fasta	TGM7	chr15	43271271	43307255
TGM7_chr15_43271271_43307255	0/0	a0006	710	1	1	0	0	0	0	copy fasta	TGM7	chr15	43271271	43307255
TGM7_chr15_43271271_43307255	0/0	a0007	710	1	1	0	0	0	0	copy fasta	TGM7	chr15	43271271	43307255
TGM7_chr15_43271271_43307255	0/0	a0008	710	1	0	1	0	0	0	copy fasta	TGM7	chr15	43271271	43307255
TGM7_chr15_43271271_43307255	0/0	a0009	710	1	0	0	1	0	0	copy fasta	TGM7	chr15	43271271	43307255
TGM7_chr15_43271271_43307255	0/0	a0010	710	1	1	0	0	0	0	copy fasta	TGM7	chr15	43271271	43307255
TGM7_chr15_43271271_43307255	0/0	a0011	710	1	0	0	1	0	0	copy fasta	TGM7	chr15	43271271	43307255
TGOLN2_chr2_85313027_85332989	0/0	a0001	437	238	35	45	131	5	22	copy fasta	TGOLN2	chr2	85313027	85332989
TGOLN2_chr2_85313027_85332989	1/1	a0002	437	143	52	28	37	8	16	copy fasta	TGOLN2	chr2	85313027	85332989
TGOLN2_chr2_85313027_85332989	0/0	a0003	437	5	1	0	4	0	0	copy fasta	TGOLN2	chr2	85313027	85332989
TGOLN2_chr2_85313027_85332989	0/0	a0004	437	3	3	0	0	0	0	copy fasta	TGOLN2	chr2	85313027	85332989
TGOLN2_chr2_85313027_85332989	0/0	a0005	437	1	0	0	1	0	0	copy fasta	TGOLN2	chr2	85313027	85332989
TGOLN2_chr2_85313027_85332989	0/0	a0006	437	1	1	0	0	0	0	copy fasta	TGOLN2	chr2	85313027	85332989
TGOLN2_chr2_85313027_85332989	0/0	a0007	437	1	0	0	1	0	0	copy fasta	TGOLN2	chr2	85313027	85332989
TGOLN2_chr2_85313027_85332989	0/0	a0008	437	1	0	1	0	0	0	copy fasta	TGOLN2	chr2	85313027	85332989
TGOLN2_chr2_85313027_85332989	0/0	a0009	437	1	0	0	0	1	0	copy fasta	TGOLN2	chr2	85313027	85332989
TGS1_chr8_55768446_55831445	0/1	a0001	853	303	57	48	152	11	34	copy fasta	TGS1	chr8	55768446	55831445
TGS1_chr8_55768446_55831445	0/0	a0002	853	27	13	7	1	1	5	copy fasta	TGS1	chr8	55768446	55831445
TGS1_chr8_55768446_55831445	0/0	a0003	853	8	7	1	0	0	0	copy fasta	TGS1	chr8	55768446	55831445
TGS1_chr8_55768446_55831445	0/0	a0004	853	6	2	1	2	0	1	copy fasta	TGS1	chr8	55768446	55831445
TGS1_chr8_55768446_55831445	0/0	a0005	853	5	5	0	0	0	0	copy fasta	TGS1	chr8	55768446	55831445
TGS1_chr8_55768446_55831445	0/0	a0006	853	4	4	0	0	0	0	copy fasta	TGS1	chr8	55768446	55831445
TGS1_chr8_55768446_55831445	0/0	a0007	853	2	0	0	0	0	2	copy fasta	TGS1	chr8	55768446	55831445
TGS1_chr8_55768446_55831445	0/0	a0008	853	2	2	0	0	0	0	copy fasta	TGS1	chr8	55768446	55831445
TGS1_chr8_55768446_55831445	0/0	a0009	853	2	0	2	0	0	0	copy fasta	TGS1	chr8	55768446	55831445
TGS1_chr8_55768446_55831445	1/0	a0010	853	1	0	0	0	0	0	copy fasta	TGS1	chr8	55768446	55831445
TGS1_chr8_55768446_55831445	0/0	a0011	853	1	0	0	0	0	1	copy fasta	TGS1	chr8	55768446	55831445
TGS1_chr8_55768446_55831445	0/0	a0012	853	1	0	0	1	0	0	copy fasta	TGS1	chr8	55768446	55831445
TGS1_chr8_55768446_55831445	0/0	a0013	853	1	0	1	0	0	0	copy fasta	TGS1	chr8	55768446	55831445
TGS1_chr8_55768446_55831445	0/0	a0014	853	1	1	0	0	0	0	copy fasta	TGS1	chr8	55768446	55831445
TGS1_chr8_55768446_55831445	0/0	a0015	853	1	0	0	1	0	0	copy fasta	TGS1	chr8	55768446	55831445
TGS1_chr8_55768446_55831445	0/0	a0016	853	1	0	0	0	0	1	copy fasta	TGS1	chr8	55768446	55831445
TGS1_chr8_55768446_55831445	0/0	a0017	853	1	1	0	0	0	0	copy fasta	TGS1	chr8	55768446	55831445
TGS1_chr8_55768446_55831445	0/0	a0018	853	1	1	0	0	0	0	copy fasta	TGS1	chr8	55768446	55831445
TGS1_chr8_55768446_55831445	0/0	a0019	853	1	1	0	0	0	0	copy fasta	TGS1	chr8	55768446	55831445
TGS1_chr8_55768446_55831445	0/0	a0020	853	1	0	0	1	0	0	copy fasta	TGS1	chr8	55768446	55831445
TG_chr8_132861958_133139899	0/1	a0001	2768	10	2	0	4	0	3	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	a0002	2768	9	0	1	6	0	2	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	1/0	a0003	2768	8	0	2	4	0	1	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	a0004	2768	7	0	3	3	0	1	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	a0005	2768	7	0	2	4	1	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	a0006	2768	5	0	1	1	2	1	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	a0007	2768	5	0	2	0	0	3	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	a0008	2768	4	0	1	3	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	a0009	2768	4	3	1	0	0	0	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	a0010	2768	4	0	0	2	0	2	copy fasta	TG	chr8	132861958	133139899
TG_chr8_132861958_133139899	0/0	a0011	2768	3	1	1	0	0	1	copy fasta	TG	chr8	132861958	133139899