JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
THAP11_chr16_67837320_67849195	0/0	a0005	307	4	3	0	1	0	0	copy fasta	THAP11	chr16	67837320	67849195
THAP11_chr16_67837320_67849195	0/0	a0006	319	2	0	0	2	0	0	copy fasta	THAP11	chr16	67837320	67849195
THAP11_chr16_67837320_67849195	0/0	a0007	308	2	0	0	2	0	0	copy fasta	THAP11	chr16	67837320	67849195
THAP11_chr16_67837320_67849195	0/0	a0008	308	1	0	1	0	0	0	copy fasta	THAP11	chr16	67837320	67849195
THAP11_chr16_67837320_67849195	0/0	a0009	322	1	1	0	0	0	0	copy fasta	THAP11	chr16	67837320	67849195
THAP11_chr16_67837320_67849195	0/0	a0010	310	1	1	0	0	0	0	copy fasta	THAP11	chr16	67837320	67849195
THAP11_chr16_67837320_67849195	0/0	a0011	304	1	0	1	0	0	0	copy fasta	THAP11	chr16	67837320	67849195
THAP12_chr11_76344956_76386132	1/1	a0001	761	354	75	65	155	13	44	copy fasta	THAP12	chr11	76344956	76386132
THAP12_chr11_76344956_76386132	0/0	a0002	761	26	0	3	22	1	0	copy fasta	THAP12	chr11	76344956	76386132
THAP12_chr11_76344956_76386132	0/0	a0003	761	1	0	0	1	0	0	copy fasta	THAP12	chr11	76344956	76386132
THAP12_chr11_76344956_76386132	0/0	a0004	761	1	1	0	0	0	0	copy fasta	THAP12	chr11	76344956	76386132
THAP1_chr8_42831674_42848325	1/1	a0001	213	314	86	60	126	8	32	copy fasta	THAP1	chr8	42831674	42848325
THAP2_chr12_71659301_71685644	1/1	a0001	228	348	84	51	158	14	39	copy fasta	THAP2	chr12	71659301	71685644
THAP2_chr12_71659301_71685644	0/0	a0002	228	10	10	0	0	0	0	copy fasta	THAP2	chr12	71659301	71685644
THAP2_chr12_71659301_71685644	0/0	a0003	227	10	0	3	2	0	5	copy fasta	THAP2	chr12	71659301	71685644
THAP2_chr12_71659301_71685644	0/0	a0004	228	2	0	0	2	0	0	copy fasta	THAP2	chr12	71659301	71685644
THAP2_chr12_71659301_71685644	0/0	a0005	223	1	0	0	1	0	0	copy fasta	THAP2	chr12	71659301	71685644
THAP2_chr12_71659301_71685644	0/0	a0006	181	1	0	0	1	0	0	copy fasta	THAP2	chr12	71659301	71685644
THAP2_chr12_71659301_71685644	0/0	a0007	228	1	0	0	1	0	0	copy fasta	THAP2	chr12	71659301	71685644
THAP2_chr12_71659301_71685644	0/0	a0008	228	1	0	0	1	0	0	copy fasta	THAP2	chr12	71659301	71685644
THAP3_chr1_6619868_6638562	1/1	a0001	239	268	76	50	106	9	25	copy fasta	THAP3	chr1	6619868	6638562
THAP3_chr1_6619868_6638562	0/0	a0002	239	139	17	28	70	7	17	copy fasta	THAP3	chr1	6619868	6638562
THAP3_chr1_6619868_6638562	0/0	a0003	239	3	3	0	0	0	0	copy fasta	THAP3	chr1	6619868	6638562
THAP4_chr2_241579405_241642158	0/1	a0001	577	274	52	36	157	5	23	copy fasta	THAP4	chr2	241579405	241642158
THAP4_chr2_241579405_241642158	1/0	a0002	577	112	41	26	20	9	15	copy fasta	THAP4	chr2	241579405	241642158
THAP4_chr2_241579405_241642158	0/0	a0003	577	1	1	0	0	0	0	copy fasta	THAP4	chr2	241579405	241642158
THAP4_chr2_241579405_241642158	0/0	a0004	577	1	0	1	0	0	0	copy fasta	THAP4	chr2	241579405	241642158
THAP4_chr2_241579405_241642158	0/0	a0005	577	1	0	0	1	0	0	copy fasta	THAP4	chr2	241579405	241642158
THAP4_chr2_241579405_241642158	0/0	a0006	577	1	0	1	0	0	0	copy fasta	THAP4	chr2	241579405	241642158
THAP5_chr7_108557132_108574706	1/1	a0001	395	409	83	71	201	8	44	copy fasta	THAP5	chr7	108557132	108574706
THAP5_chr7_108557132_108574706	0/0	a0002	395	13	12	1	0	0	0	copy fasta	THAP5	chr7	108557132	108574706
THAP5_chr7_108557132_108574706	0/0	a0003	395	1	0	0	1	0	0	copy fasta	THAP5	chr7	108557132	108574706
THAP5_chr7_108557132_108574706	0/0	a0004	395	1	1	0	0	0	0	copy fasta	THAP5	chr7	108557132	108574706
THAP6_chr4_75509473_75535026	1/1	a0001	222	386	80	68	187	12	37	copy fasta	THAP6	chr4	75509473	75535026
THAP6_chr4_75509473_75535026	0/0	a0002	222	14	14	0	0	0	0	copy fasta	THAP6	chr4	75509473	75535026
THAP6_chr4_75509473_75535026	0/0	a0003	222	7	0	0	7	0	0	copy fasta	THAP6	chr4	75509473	75535026
THAP6_chr4_75509473_75535026	0/0	a0004	222	2	0	0	2	0	0	copy fasta	THAP6	chr4	75509473	75535026
THAP6_chr4_75509473_75535026	0/0	a0005	222	1	0	0	0	0	1	copy fasta	THAP6	chr4	75509473	75535026
THAP6_chr4_75509473_75535026	0/0	a0006	222	1	0	0	1	0	0	copy fasta	THAP6	chr4	75509473	75535026
THAP6_chr4_75509473_75535026	0/0	a0007	222	1	0	0	1	0	0	copy fasta	THAP6	chr4	75509473	75535026
THAP7_chr22_20994104_21007118	0/1	a0001	309	374	86	72	160	17	38	copy fasta	THAP7	chr22	20994104	21007118
THAP7_chr22_20994104_21007118	1/0	a0002	309	44	8	6	23	1	5	copy fasta	THAP7	chr22	20994104	21007118
THAP7_chr22_20994104_21007118	0/0	a0003	309	3	0	3	0	0	0	copy fasta	THAP7	chr22	20994104	21007118
THAP7_chr22_20994104_21007118	0/0	a0004	309	2	2	0	0	0	0	copy fasta	THAP7	chr22	20994104	21007118
THAP7_chr22_20994104_21007118	0/0	a0005	309	2	2	0	0	0	0	copy fasta	THAP7	chr22	20994104	21007118
THAP7_chr22_20994104_21007118	0/0	a0006	309	2	0	0	2	0	0	copy fasta	THAP7	chr22	20994104	21007118
THAP7_chr22_20994104_21007118	0/0	a0007	309	1	0	0	1	0	0	copy fasta	THAP7	chr22	20994104	21007118
THAP7_chr22_20994104_21007118	0/0	a0008	309	1	0	0	1	0	0	copy fasta	THAP7	chr22	20994104	21007118
THAP7_chr22_20994104_21007118	0/0	a0009	309	1	0	0	1	0	0	copy fasta	THAP7	chr22	20994104	21007118
THAP7_chr22_20994104_21007118	0/0	a0010	309	1	0	1	0	0	0	copy fasta	THAP7	chr22	20994104	21007118