JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
BFSP1_chr20_17488905_17536379	0/0	a0005	665	4	4	0	0	0	0	copy fasta	BFSP1	chr20	17488905	17536379
BFSP1_chr20_17488905_17536379	0/0	a0006	665	3	3	0	0	0	0	copy fasta	BFSP1	chr20	17488905	17536379
BFSP1_chr20_17488905_17536379	0/0	a0007	665	2	0	0	2	0	0	copy fasta	BFSP1	chr20	17488905	17536379
BFSP1_chr20_17488905_17536379	0/0	a0008	665	1	1	0	0	0	0	copy fasta	BFSP1	chr20	17488905	17536379
BFSP1_chr20_17488905_17536379	0/0	a0009	665	1	0	1	0	0	0	copy fasta	BFSP1	chr20	17488905	17536379
BFSP1_chr20_17488905_17536379	0/0	a0010	665	1	0	1	0	0	0	copy fasta	BFSP1	chr20	17488905	17536379
BFSP1_chr20_17488905_17536379	0/0	a0011	665	1	1	0	0	0	0	copy fasta	BFSP1	chr20	17488905	17536379
BFSP1_chr20_17488905_17536379	0/0	a0012	665	1	1	0	0	0	0	copy fasta	BFSP1	chr20	17488905	17536379
BFSP2_chr3_133395056_133480208	1/1	a0001	415	263	80	52	90	8	31	copy fasta	BFSP2	chr3	133395056	133480208
BFSP2_chr3_133395056_133480208	0/0	a0002	415	9	1	2	2	2	2	copy fasta	BFSP2	chr3	133395056	133480208
BFSP2_chr3_133395056_133480208	0/0	a0003	415	1	0	0	1	0	0	copy fasta	BFSP2	chr3	133395056	133480208
BFSP2_chr3_133395056_133480208	0/0	a0004	415	1	0	0	1	0	0	copy fasta	BFSP2	chr3	133395056	133480208
BFSP2_chr3_133395056_133480208	0/0	a0005	415	1	0	0	0	0	1	copy fasta	BFSP2	chr3	133395056	133480208
BFSP2_chr3_133395056_133480208	0/0	a0006	415	1	1	0	0	0	0	copy fasta	BFSP2	chr3	133395056	133480208
BGLAP_chr1_156237184_156248317	1/1	a0001	100	390	85	77	160	16	50	copy fasta	BGLAP	chr1	156237184	156248317
BGLAP_chr1_156237184_156248317	0/0	a0002	100	5	5	0	0	0	0	copy fasta	BGLAP	chr1	156237184	156248317
BGLAP_chr1_156237184_156248317	0/0	a0003	100	2	2	0	0	0	0	copy fasta	BGLAP	chr1	156237184	156248317
BGLAP_chr1_156237184_156248317	0/0	a0004	100	1	0	0	1	0	0	copy fasta	BGLAP	chr1	156237184	156248317
BGLAP_chr1_156237184_156248317	0/0	a0005	100	1	0	0	1	0	0	copy fasta	BGLAP	chr1	156237184	156248317
BGLAP_chr1_156237184_156248317	0/0	a0006	100	1	0	1	0	0	0	copy fasta	BGLAP	chr1	156237184	156248317
BGN_chrX_153489980_153514546	1/1	a0001	368	314	75	60	135	11	31	copy fasta	BGN	chrX	153489980	153514546
BGN_chrX_153489980_153514546	0/0	a0002	368	2	0	0	2	0	0	copy fasta	BGN	chrX	153489980	153514546
BGN_chrX_153489980_153514546	0/0	a0003	121	1	0	0	1	0	0	copy fasta	BGN	chrX	153489980	153514546
BGN_chrX_153489980_153514546	0/0	a0004	327	1	1	0	0	0	0	copy fasta	BGN	chrX	153489980	153514546
BGN_chrX_153489980_153514546	0/0	a0005	368	1	0	0	0	0	1	copy fasta	BGN	chrX	153489980	153514546
BGN_chrX_153489980_153514546	0/0	a0006	80	1	0	0	1	0	0	copy fasta	BGN	chrX	153489980	153514546
BGN_chrX_153489980_153514546	0/0	a0007	19	1	0	0	1	0	0	copy fasta	BGN	chrX	153489980	153514546
BHLHA15_chr7_98206439_98220457	1/1	a0001	189	454	97	84	205	16	50	copy fasta	BHLHA15	chr7	98206439	98220457
BHLHA15_chr7_98206439_98220457	0/0	a0002	102	1	0	0	1	0	0	copy fasta	BHLHA15	chr7	98206439	98220457
BHLHA15_chr7_98206439_98220457	0/0	a0003	189	1	1	0	0	0	0	copy fasta	BHLHA15	chr7	98206439	98220457
BHLHA9_chr17_1265444_1276815	1/1	a0001	235	438	96	84	194	18	44	copy fasta	BHLHA9	chr17	1265444	1276815
BHLHA9_chr17_1265444_1276815	0/0	a0002	235	2	0	0	0	0	2	copy fasta	BHLHA9	chr17	1265444	1276815
BHLHA9_chr17_1265444_1276815	0/0	a0003	235	1	0	0	1	0	0	copy fasta	BHLHA9	chr17	1265444	1276815
BHLHA9_chr17_1265444_1276815	0/0	a0004	235	1	0	0	1	0	0	copy fasta	BHLHA9	chr17	1265444	1276815
BHLHE22_chr8_64575365_64588627	0/0	a0001	381	182	26	24	112	4	16	copy fasta	BHLHE22	chr8	64575365	64588627
BHLHE22_chr8_64575365_64588627	1/1	a0002	381	175	28	38	71	9	27	copy fasta	BHLHE22	chr8	64575365	64588627
BHLHE22_chr8_64575365_64588627	0/0	a0003	382	31	21	5	2	0	3	copy fasta	BHLHE22	chr8	64575365	64588627
BHLHE22_chr8_64575365_64588627	0/0	a0004	382	14	14	0	0	0	0	copy fasta	BHLHE22	chr8	64575365	64588627
BHLHE22_chr8_64575365_64588627	0/0	a0005	384	6	0	3	0	1	2	copy fasta	BHLHE22	chr8	64575365	64588627
BHLHE22_chr8_64575365_64588627	0/0	a0006	381	6	0	0	6	0	0	copy fasta	BHLHE22	chr8	64575365	64588627
BHLHE22_chr8_64575365_64588627	0/0	a0007	384	5	5	0	0	0	0	copy fasta	BHLHE22	chr8	64575365	64588627
BHLHE22_chr8_64575365_64588627	0/0	a0008	383	4	2	1	1	0	0	copy fasta	BHLHE22	chr8	64575365	64588627
BHLHE22_chr8_64575365_64588627	0/0	a0009	381	2	0	0	0	2	0	copy fasta	BHLHE22	chr8	64575365	64588627
BHLHE22_chr8_64575365_64588627	0/0	a0010	383	1	1	0	0	0	0	copy fasta	BHLHE22	chr8	64575365	64588627
BHLHE22_chr8_64575365_64588627	0/0	a0011	382	1	0	0	1	0	0	copy fasta	BHLHE22	chr8	64575365	64588627
BHLHE22_chr8_64575365_64588627	0/0	a0012	385	1	1	0	0	0	0	copy fasta	BHLHE22	chr8	64575365	64588627
BHLHE22_chr8_64575365_64588627	0/0	a0013	381	1	0	1	0	0	0	copy fasta	BHLHE22	chr8	64575365	64588627
BHLHE22_chr8_64575365_64588627	0/0	a0014	377	1	0	1	0	0	0	copy fasta	BHLHE22	chr8	64575365	64588627
BHLHE22_chr8_64575365_64588627	0/0	a0015	382	1	0	0	1	0	0	copy fasta	BHLHE22	chr8	64575365	64588627
BHLHE22_chr8_64575365_64588627	0/0	a0016	381	1	0	1	0	0	0	copy fasta	BHLHE22	chr8	64575365	64588627