JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
THAP7_chr22_20994104_21007118	0/0	a0011	309	1	0	0	0	0	1	copy fasta	THAP7	chr22	20994104	21007118
THAP8_chr19_36029984_36059285	1/1	a0001	274	232	68	41	82	9	30	copy fasta	THAP8	chr19	36029984	36059285
THAP8_chr19_36029984_36059285	0/0	a0002	274	117	18	8	74	8	9	copy fasta	THAP8	chr19	36029984	36059285
THAP8_chr19_36029984_36059285	0/0	a0003	274	48	2	5	38	0	3	copy fasta	THAP8	chr19	36029984	36059285
THAP8_chr19_36029984_36059285	0/0	a0004	274	35	4	20	4	1	6	copy fasta	THAP8	chr19	36029984	36059285
THAP8_chr19_36029984_36059285	0/0	a0005	274	2	0	0	2	0	0	copy fasta	THAP8	chr19	36029984	36059285
THAP8_chr19_36029984_36059285	0/0	a0006	274	1	0	0	1	0	0	copy fasta	THAP8	chr19	36029984	36059285
THAP8_chr19_36029984_36059285	0/0	a0007	274	1	0	0	1	0	0	copy fasta	THAP8	chr19	36029984	36059285
THAP8_chr19_36029984_36059285	0/0	a0008	274	1	1	0	0	0	0	copy fasta	THAP8	chr19	36029984	36059285
THAP8_chr19_36029984_36059285	0/0	a0009	274	1	0	0	1	0	0	copy fasta	THAP8	chr19	36029984	36059285
THAP8_chr19_36029984_36059285	0/0	a0010	274	1	0	0	1	0	0	copy fasta	THAP8	chr19	36029984	36059285
THAP8_chr19_36029984_36059285	0/0	a0011	52	1	1	0	0	0	0	copy fasta	THAP8	chr19	36029984	36059285
THAP9_chr4_82895735_82924969	0/0	a0001	903	258	65	25	139	4	25	copy fasta	THAP9	chr4	82895735	82924969
THAP9_chr4_82895735_82924969	0/1	a0002	903	108	2	34	52	4	15	copy fasta	THAP9	chr4	82895735	82924969
THAP9_chr4_82895735_82924969	0/0	a0003	903	9	9	0	0	0	0	copy fasta	THAP9	chr4	82895735	82924969
THAP9_chr4_82895735_82924969	0/0	a0004	903	4	4	0	0	0	0	copy fasta	THAP9	chr4	82895735	82924969
THAP9_chr4_82895735_82924969	1/0	a0005	903	2	1	0	0	0	0	copy fasta	THAP9	chr4	82895735	82924969
THAP9_chr4_82895735_82924969	0/0	a0006	903	1	0	0	1	0	0	copy fasta	THAP9	chr4	82895735	82924969
THAP9_chr4_82895735_82924969	0/0	a0007	903	1	0	0	0	0	1	copy fasta	THAP9	chr4	82895735	82924969
THAP9_chr4_82895735_82924969	0/0	a0008	903	1	0	0	0	0	1	copy fasta	THAP9	chr4	82895735	82924969
THAP9_chr4_82895735_82924969	0/0	a0009	903	1	0	0	1	0	0	copy fasta	THAP9	chr4	82895735	82924969
THAP9_chr4_82895735_82924969	0/0	a0010	903	1	1	0	0	0	0	copy fasta	THAP9	chr4	82895735	82924969
THAP9_chr4_82895735_82924969	0/0	a0011	903	1	0	0	1	0	0	copy fasta	THAP9	chr4	82895735	82924969
THAP9_chr4_82895735_82924969	0/0	a0012	903	1	0	1	0	0	0	copy fasta	THAP9	chr4	82895735	82924969
THBD_chr20_23040633_23054672	1/0	a0001	575	368	91	73	153	11	39	copy fasta	THBD	chr20	23040633	23054672
THBD_chr20_23040633_23054672	0/1	a0002	575	82	2	6	60	4	9	copy fasta	THBD	chr20	23040633	23054672
THBD_chr20_23040633_23054672	0/0	a0003	575	5	0	2	3	0	0	copy fasta	THBD	chr20	23040633	23054672
THBD_chr20_23040633_23054672	0/0	a0004	575	3	3	0	0	0	0	copy fasta	THBD	chr20	23040633	23054672
THBD_chr20_23040633_23054672	0/0	a0005	575	3	0	2	0	1	0	copy fasta	THBD	chr20	23040633	23054672
THBD_chr20_23040633_23054672	0/0	a0006	575	2	0	0	2	0	0	copy fasta	THBD	chr20	23040633	23054672
THBD_chr20_23040633_23054672	0/0	a0007	575	2	2	0	0	0	0	copy fasta	THBD	chr20	23040633	23054672
THBD_chr20_23040633_23054672	0/0	a0008	575	1	0	0	1	0	0	copy fasta	THBD	chr20	23040633	23054672
THBD_chr20_23040633_23054672	0/0	a0009	575	1	0	1	0	0	0	copy fasta	THBD	chr20	23040633	23054672
THBD_chr20_23040633_23054672	0/0	a0010	575	1	0	0	1	0	0	copy fasta	THBD	chr20	23040633	23054672
THBS1_chr15_39576079_39604466	1/1	a0001	1170	181	40	37	73	11	18	copy fasta	THBS1	chr15	39576079	39604466
THBS1_chr15_39576079_39604466	0/0	a0002	1170	133	33	20	72	0	8	copy fasta	THBS1	chr15	39576079	39604466
THBS1_chr15_39576079_39604466	0/0	a0003	1170	14	1	5	0	3	5	copy fasta	THBS1	chr15	39576079	39604466
THBS1_chr15_39576079_39604466	0/0	a0004	1170	13	13	0	0	0	0	copy fasta	THBS1	chr15	39576079	39604466
THBS1_chr15_39576079_39604466	0/0	a0005	1170	4	0	0	4	0	0	copy fasta	THBS1	chr15	39576079	39604466
THBS1_chr15_39576079_39604466	0/0	a0006	1170	2	0	0	2	0	0	copy fasta	THBS1	chr15	39576079	39604466
THBS1_chr15_39576079_39604466	0/0	a0007	1170	1	1	0	0	0	0	copy fasta	THBS1	chr15	39576079	39604466
THBS1_chr15_39576079_39604466	0/0	a0008	1170	1	1	0	0	0	0	copy fasta	THBS1	chr15	39576079	39604466
THBS1_chr15_39576079_39604466	0/0	a0009	1170	1	0	0	0	0	1	copy fasta	THBS1	chr15	39576079	39604466
THBS1_chr15_39576079_39604466	0/0	a0010	1170	1	0	0	1	0	0	copy fasta	THBS1	chr15	39576079	39604466
THBS1_chr15_39576079_39604466	0/0	a0011	1170	1	1	0	0	0	0	copy fasta	THBS1	chr15	39576079	39604466
THBS2_chr6_169210785_169258846	1/1	a0001	1172	362	70	81	154	16	39	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	a0002	1172	6	5	1	0	0	0	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	a0003	1172	6	6	0	0	0	0	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	a0004	1172	4	4	0	0	0	0	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	a0005	1172	3	2	1	0	0	0	copy fasta	THBS2	chr6	169210785	169258846