JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
THBS2_chr6_169210785_169258846	0/0	a0006	1172	2	2	0	0	0	0	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	a0007	1172	2	2	0	0	0	0	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	a0008	1172	2	2	0	0	0	0	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	a0009	1172	2	2	0	0	0	0	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	a0010	1172	1	1	0	0	0	0	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	a0011	1172	1	1	0	0	0	0	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	a0012	1172	1	1	0	0	0	0	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	a0013	1172	1	0	1	0	0	0	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	a0014	1172	1	0	0	0	0	1	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	a0015	1172	1	0	0	1	0	0	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	a0016	1172	1	0	0	1	0	0	copy fasta	THBS2	chr6	169210785	169258846
THBS3_chr1_155190588_155212897	1/1	a0001	956	267	72	48	105	11	29	copy fasta	THBS3	chr1	155190588	155212897
THBS3_chr1_155190588_155212897	0/0	a0002	956	24	13	2	3	2	4	copy fasta	THBS3	chr1	155190588	155212897
THBS3_chr1_155190588_155212897	0/0	a0003	956	2	0	0	0	1	1	copy fasta	THBS3	chr1	155190588	155212897
THBS3_chr1_155190588_155212897	0/0	a0004	956	1	1	0	0	0	0	copy fasta	THBS3	chr1	155190588	155212897
THBS3_chr1_155190588_155212897	0/0	a0005	956	1	0	0	1	0	0	copy fasta	THBS3	chr1	155190588	155212897
THBS3_chr1_155190588_155212897	0/0	a0006	956	1	0	1	0	0	0	copy fasta	THBS3	chr1	155190588	155212897
THBS3_chr1_155190588_155212897	0/0	a0007	956	1	0	1	0	0	0	copy fasta	THBS3	chr1	155190588	155212897
THBS3_chr1_155190588_155212897	0/0	a0008	956	1	0	0	1	0	0	copy fasta	THBS3	chr1	155190588	155212897
THBS4_chr5_80030348_80088287	1/1	a0001	961	317	57	44	166	13	35	copy fasta	THBS4	chr5	80030348	80088287
THBS4_chr5_80030348_80088287	0/0	a0002	961	57	10	16	23	2	6	copy fasta	THBS4	chr5	80030348	80088287
THBS4_chr5_80030348_80088287	0/0	a0003	961	7	0	7	0	0	0	copy fasta	THBS4	chr5	80030348	80088287
THBS4_chr5_80030348_80088287	0/0	a0004	961	4	3	1	0	0	0	copy fasta	THBS4	chr5	80030348	80088287
THBS4_chr5_80030348_80088287	0/0	a0005	961	3	3	0	0	0	0	copy fasta	THBS4	chr5	80030348	80088287
THBS4_chr5_80030348_80088287	0/0	a0006	961	1	1	0	0	0	0	copy fasta	THBS4	chr5	80030348	80088287
THBS4_chr5_80030348_80088287	0/0	a0007	961	1	0	0	0	1	0	copy fasta	THBS4	chr5	80030348	80088287
THBS4_chr5_80030348_80088287	0/0	a0008	961	1	1	0	0	0	0	copy fasta	THBS4	chr5	80030348	80088287
THBS4_chr5_80030348_80088287	0/0	a0009	961	1	0	0	0	0	1	copy fasta	THBS4	chr5	80030348	80088287
THBS4_chr5_80030348_80088287	0/0	a0010	961	1	0	0	1	0	0	copy fasta	THBS4	chr5	80030348	80088287
THBS4_chr5_80030348_80088287	0/0	a0011	961	1	1	0	0	0	0	copy fasta	THBS4	chr5	80030348	80088287
THEGL_chr4_56525606_56608507	1/1	a0001	465	318	74	63	131	15	33	copy fasta	THEGL	chr4	56525606	56608507
THEGL_chr4_56525606_56608507	0/0	a0002	465	43	4	2	35	1	1	copy fasta	THEGL	chr4	56525606	56608507
THEGL_chr4_56525606_56608507	0/0	a0003	465	9	9	0	0	0	0	copy fasta	THEGL	chr4	56525606	56608507
THEGL_chr4_56525606_56608507	0/0	a0004	465	3	3	0	0	0	0	copy fasta	THEGL	chr4	56525606	56608507
THEGL_chr4_56525606_56608507	0/0	a0005	465	3	0	3	0	0	0	copy fasta	THEGL	chr4	56525606	56608507
THEGL_chr4_56525606_56608507	0/0	a0006	465	1	1	0	0	0	0	copy fasta	THEGL	chr4	56525606	56608507
THEGL_chr4_56525606_56608507	0/0	a0007	465	1	1	0	0	0	0	copy fasta	THEGL	chr4	56525606	56608507
THEGL_chr4_56525606_56608507	0/0	a0008	465	1	1	0	0	0	0	copy fasta	THEGL	chr4	56525606	56608507
THEGL_chr4_56525606_56608507	0/0	a0009	465	1	1	0	0	0	0	copy fasta	THEGL	chr4	56525606	56608507
THEGL_chr4_56525606_56608507	0/0	a0010	465	1	1	0	0	0	0	copy fasta	THEGL	chr4	56525606	56608507
THEGL_chr4_56525606_56608507	0/0	a0011	465	1	0	1	0	0	0	copy fasta	THEGL	chr4	56525606	56608507
THEGL_chr4_56525606_56608507	0/0	a0012	465	1	0	1	0	0	0	copy fasta	THEGL	chr4	56525606	56608507
THEGL_chr4_56525606_56608507	0/0	a0013	465	1	1	0	0	0	0	copy fasta	THEGL	chr4	56525606	56608507
THEG_chr19_356747_381026	1/1	a0001	379	227	70	63	50	15	27	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	a0002	379	62	0	3	55	0	4	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	a0003	379	21	0	1	14	1	5	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	a0004	167	12	12	0	0	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	a0005	379	12	1	0	9	0	2	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	a0006	379	8	4	2	1	0	1	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	a0007	379	6	0	0	6	0	0	copy fasta	THEG	chr19	356747	381026