JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
THEG_chr19_356747_381026	0/0	a0008	379	6	0	0	6	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	a0009	379	3	3	0	0	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	a0010	379	2	0	2	0	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	a0011	379	2	0	1	0	0	1	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	a0012	379	1	0	0	1	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	a0013	379	1	1	0	0	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	a0014	306	1	0	1	0	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	a0015	379	1	0	0	1	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	a0016	379	1	0	0	1	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	a0017	379	1	1	0	0	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	a0018	379	1	0	0	1	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	a0019	379	1	0	0	1	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	a0020	370	1	0	1	0	0	0	copy fasta	THEG	chr19	356747	381026
THEM4_chr1_151865866_151914511	0/1	a0001	240	324	70	46	161	12	34	copy fasta	THEM4	chr1	151865866	151914511
THEM4_chr1_151865866_151914511	1/0	a0002	240	42	14	9	12	4	2	copy fasta	THEM4	chr1	151865866	151914511
THEM4_chr1_151865866_151914511	0/0	a0003	240	3	3	0	0	0	0	copy fasta	THEM4	chr1	151865866	151914511
THEM4_chr1_151865866_151914511	0/0	a0004	240	2	2	0	0	0	0	copy fasta	THEM4	chr1	151865866	151914511
THEM4_chr1_151865866_151914511	0/0	a0005	240	1	1	0	0	0	0	copy fasta	THEM4	chr1	151865866	151914511
THEM4_chr1_151865866_151914511	0/0	a0006	240	1	0	1	0	0	0	copy fasta	THEM4	chr1	151865866	151914511
THEM4_chr1_151865866_151914511	0/0	a0007	240	1	0	0	1	0	0	copy fasta	THEM4	chr1	151865866	151914511
THEM5_chr1_151842101_151858712	0/1	a0001	247	330	79	73	133	16	28	copy fasta	THEM5	chr1	151842101	151858712
THEM5_chr1_151842101_151858712	0/0	a0002	247	96	9	6	63	2	16	copy fasta	THEM5	chr1	151842101	151858712
THEM5_chr1_151842101_151858712	0/0	a0003	247	5	4	1	0	0	0	copy fasta	THEM5	chr1	151842101	151858712
THEM5_chr1_151842101_151858712	0/0	a0004	247	3	0	0	0	0	3	copy fasta	THEM5	chr1	151842101	151858712
THEM5_chr1_151842101_151858712	0/0	a0005	247	3	3	0	0	0	0	copy fasta	THEM5	chr1	151842101	151858712
THEM5_chr1_151842101_151858712	1/0	a0006	247	1	0	0	0	0	0	copy fasta	THEM5	chr1	151842101	151858712
THEM5_chr1_151842101_151858712	0/0	a0007	247	1	0	0	0	0	1	copy fasta	THEM5	chr1	151842101	151858712
THEM5_chr1_151842101_151858712	0/0	a0008	247	1	1	0	0	0	0	copy fasta	THEM5	chr1	151842101	151858712
THEM6_chr8_142722223_142741927	1/1	a0001	208	410	87	76	185	18	42	copy fasta	THEM6	chr8	142722223	142741927
THEM6_chr8_142722223_142741927	0/0	a0002	208	1	1	0	0	0	0	copy fasta	THEM6	chr8	142722223	142741927
THEM6_chr8_142722223_142741927	0/0	a0003	208	1	0	1	0	0	0	copy fasta	THEM6	chr8	142722223	142741927
THEM6_chr8_142722223_142741927	0/0	a0004	208	1	0	1	0	0	0	copy fasta	THEM6	chr8	142722223	142741927
THEM6_chr8_142722223_142741927	0/0	a0005	208	1	0	0	1	0	0	copy fasta	THEM6	chr8	142722223	142741927
THEMIS2_chr1_27867544_27891675	1/0	a0001	643	226	81	43	82	5	14	copy fasta	THEMIS2	chr1	27867544	27891675
THEMIS2_chr1_27867544_27891675	0/1	a0002	643	177	11	39	79	13	34	copy fasta	THEMIS2	chr1	27867544	27891675
THEMIS2_chr1_27867544_27891675	0/0	a0003	643	1	0	0	1	0	0	copy fasta	THEMIS2	chr1	27867544	27891675
THEMIS2_chr1_27867544_27891675	0/0	a0004	643	1	0	0	1	0	0	copy fasta	THEMIS2	chr1	27867544	27891675
THEMIS2_chr1_27867544_27891675	0/0	a0005	643	1	0	0	1	0	0	copy fasta	THEMIS2	chr1	27867544	27891675
THEMIS_chr6_127703200_127906058	0/1	a0001	641	114	49	26	20	7	11	copy fasta	THEMIS	chr6	127703200	127906058
THEMIS_chr6_127703200_127906058	0/0	a0002	641	106	19	28	42	5	12	copy fasta	THEMIS	chr6	127703200	127906058
THEMIS_chr6_127703200_127906058	0/0	a0003	641	1	1	0	0	0	0	copy fasta	THEMIS	chr6	127703200	127906058
THEMIS_chr6_127703200_127906058	0/0	a0004	641	1	1	0	0	0	0	copy fasta	THEMIS	chr6	127703200	127906058
THEMIS_chr6_127703200_127906058	0/0	a0005	641	1	0	0	0	0	1	copy fasta	THEMIS	chr6	127703200	127906058
THG1L_chr5_157726420_157746449	0/1	a0001	298	322	78	47	147	15	34	copy fasta	THG1L	chr5	157726420	157746449
THG1L_chr5_157726420_157746449	1/0	a0002	298	123	20	37	52	1	12	copy fasta	THG1L	chr5	157726420	157746449
THG1L_chr5_157726420_157746449	0/0	a0003	298	1	0	0	1	0	0	copy fasta	THG1L	chr5	157726420	157746449
THNSL1_chr10_25011612_25031664	1/0	a0001	743	372	75	62	175	15	44	copy fasta	THNSL1	chr10	25011612	25031664
THNSL1_chr10_25011612_25031664	0/0	a0002	743	13	10	3	0	0	0	copy fasta	THNSL1	chr10	25011612	25031664
THNSL1_chr10_25011612_25031664	0/0	a0003	743	7	1	1	0	1	4	copy fasta	THNSL1	chr10	25011612	25031664
THNSL1_chr10_25011612_25031664	0/0	a0004	743	5	5	0	0	0	0	copy fasta	THNSL1	chr10	25011612	25031664