JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
THNSL1_chr10_25011612_25031664	0/0	a0005	743	4	4	0	0	0	0	copy fasta	THNSL1	chr10	25011612	25031664
THNSL1_chr10_25011612_25031664	0/1	a0006	743	4	1	2	0	0	0	copy fasta	THNSL1	chr10	25011612	25031664
THNSL1_chr10_25011612_25031664	0/0	a0007	743	2	0	0	2	0	0	copy fasta	THNSL1	chr10	25011612	25031664
THNSL1_chr10_25011612_25031664	0/0	a0008	743	2	0	0	2	0	0	copy fasta	THNSL1	chr10	25011612	25031664
THNSL1_chr10_25011612_25031664	0/0	a0009	743	1	1	0	0	0	0	copy fasta	THNSL1	chr10	25011612	25031664
THNSL1_chr10_25011612_25031664	0/0	a0010	743	1	1	0	0	0	0	copy fasta	THNSL1	chr10	25011612	25031664
THNSL1_chr10_25011612_25031664	0/0	a0011	743	1	0	0	1	0	0	copy fasta	THNSL1	chr10	25011612	25031664
THNSL2_chr2_88165346_88191627	0/1	a0001	484	28	2	9	8	6	2	copy fasta	THNSL2	chr2	88165346	88191627
THNSL2_chr2_88165346_88191627	1/0	a0002	484	14	1	6	2	2	2	copy fasta	THNSL2	chr2	88165346	88191627
THNSL2_chr2_88165346_88191627	0/0	a0003	484	3	0	3	0	0	0	copy fasta	THNSL2	chr2	88165346	88191627
THNSL2_chr2_88165346_88191627	0/0	a0004	484	2	0	0	0	1	1	copy fasta	THNSL2	chr2	88165346	88191627
THNSL2_chr2_88165346_88191627	0/0	a0005	484	1	0	1	0	0	0	copy fasta	THNSL2	chr2	88165346	88191627
THNSL2_chr2_88165346_88191627	0/0	a0006	250	1	1	0	0	0	0	copy fasta	THNSL2	chr2	88165346	88191627
THNSL2_chr2_88165346_88191627	0/0	a0007	484	1	0	1	0	0	0	copy fasta	THNSL2	chr2	88165346	88191627
THNSL2_chr2_88165346_88191627	0/0	a0008	258	1	0	0	0	1	0	copy fasta	THNSL2	chr2	88165346	88191627
THNSL2_chr2_88165346_88191627	0/0	a0009	484	1	0	0	0	0	1	copy fasta	THNSL2	chr2	88165346	88191627
THNSL2_chr2_88165346_88191627	0/0	a0010	484	1	0	1	0	0	0	copy fasta	THNSL2	chr2	88165346	88191627
THNSL2_chr2_88165346_88191627	0/0	a0011	484	1	0	1	0	0	0	copy fasta	THNSL2	chr2	88165346	88191627
THOC1_chr18_209520_273047	1/1	a0001	657	376	94	68	156	14	42	copy fasta	THOC1	chr18	209520	273047
THOC2_chrX_123595569_123738052	1/1	a0001	1593	247	69	47	92	11	26	copy fasta	THOC2	chrX	123595569	123738052
THOC2_chrX_123595569_123738052	0/0	a0002	1593	1	1	0	0	0	0	copy fasta	THOC2	chrX	123595569	123738052
THOC2_chrX_123595569_123738052	0/0	a0003	1593	1	0	0	1	0	0	copy fasta	THOC2	chrX	123595569	123738052
THOC2_chrX_123595569_123738052	0/0	a0004	855	1	0	0	1	0	0	copy fasta	THOC2	chrX	123595569	123738052
THOC2_chrX_123595569_123738052	0/0	a0005	1593	1	0	0	1	0	0	copy fasta	THOC2	chrX	123595569	123738052
THOC3_chr5_175954531_175973315	1/0	a0001	351	252	56	53	118	10	14	copy fasta	THOC3	chr5	175954531	175973315
THOC3_chr5_175954531_175973315	0/0	a0002	351	6	0	1	5	0	0	copy fasta	THOC3	chr5	175954531	175973315
THOC3_chr5_175954531_175973315	0/0	a0003	351	1	0	0	1	0	0	copy fasta	THOC3	chr5	175954531	175973315
THOC5_chr22_29500879_29558757	1/1	a0001	683	192	63	36	55	10	26	copy fasta	THOC5	chr22	29500879	29558757
THOC5_chr22_29500879_29558757	0/0	a0002	683	94	11	11	63	1	8	copy fasta	THOC5	chr22	29500879	29558757
THOC5_chr22_29500879_29558757	0/0	a0003	683	88	18	20	40	4	6	copy fasta	THOC5	chr22	29500879	29558757
THOC5_chr22_29500879_29558757	0/0	a0004	683	5	1	0	2	0	2	copy fasta	THOC5	chr22	29500879	29558757
THOC5_chr22_29500879_29558757	0/0	a0005	683	1	1	0	0	0	0	copy fasta	THOC5	chr22	29500879	29558757
THOC5_chr22_29500879_29558757	0/0	a0006	683	1	0	0	0	1	0	copy fasta	THOC5	chr22	29500879	29558757
THOC5_chr22_29500879_29558757	0/0	a0007	683	1	0	1	0	0	0	copy fasta	THOC5	chr22	29500879	29558757
THOC5_chr22_29500879_29558757	0/0	a0008	683	1	0	0	1	0	0	copy fasta	THOC5	chr22	29500879	29558757
THOC5_chr22_29500879_29558757	0/0	a0009	683	1	0	0	1	0	0	copy fasta	THOC5	chr22	29500879	29558757
THOC6_chr16_3019035_3032750	1/1	a0001	341	389	90	72	165	16	44	copy fasta	THOC6	chr16	3019035	3032750
THOC6_chr16_3019035_3032750	0/0	a0002	341	2	0	0	2	0	0	copy fasta	THOC6	chr16	3019035	3032750
THOC6_chr16_3019035_3032750	0/0	a0003	341	1	0	0	1	0	0	copy fasta	THOC6	chr16	3019035	3032750
THOC6_chr16_3019035_3032750	0/0	a0004	341	1	1	0	0	0	0	copy fasta	THOC6	chr16	3019035	3032750
THOC6_chr16_3019035_3032750	0/0	a0005	341	1	1	0	0	0	0	copy fasta	THOC6	chr16	3019035	3032750
THOC6_chr16_3019035_3032750	0/0	a0006	341	1	1	0	0	0	0	copy fasta	THOC6	chr16	3019035	3032750
THOC6_chr16_3019035_3032750	0/0	a0007	341	1	1	0	0	0	0	copy fasta	THOC6	chr16	3019035	3032750
THOC7_chr3_63828870_63868805	1/1	a0001	204	374	90	62	168	14	38	copy fasta	THOC7	chr3	63828870	63868805
THOP1_chr19_2780503_2820807	1/1	a0001	689	335	75	53	152	14	39	copy fasta	THOP1	chr19	2780503	2820807
THOP1_chr19_2780503_2820807	0/0	a0002	662	18	9	3	0	3	3	copy fasta	THOP1	chr19	2780503	2820807
THOP1_chr19_2780503_2820807	0/0	a0003	684	4	4	0	0	0	0	copy fasta	THOP1	chr19	2780503	2820807
THOP1_chr19_2780503_2820807	0/0	a0004	689	4	0	0	4	0	0	copy fasta	THOP1	chr19	2780503	2820807
THOP1_chr19_2780503_2820807	0/0	a0005	661	3	0	2	1	0	0	copy fasta	THOP1	chr19	2780503	2820807
THOP1_chr19_2780503_2820807	0/0	a0006	689	1	1	0	0	0	0	copy fasta	THOP1	chr19	2780503	2820807