JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
THOP1_chr19_2780503_2820807	0/0	a0007	689	1	1	0	0	0	0	copy fasta	THOP1	chr19	2780503	2820807
THOP1_chr19_2780503_2820807	0/0	a0008	661	1	0	0	0	1	0	copy fasta	THOP1	chr19	2780503	2820807
THOP1_chr19_2780503_2820807	0/0	a0009	689	1	0	0	1	0	0	copy fasta	THOP1	chr19	2780503	2820807
THOP1_chr19_2780503_2820807	0/0	a0010	662	1	1	0	0	0	0	copy fasta	THOP1	chr19	2780503	2820807
THOP1_chr19_2780503_2820807	0/0	a0011	662	1	1	0	0	0	0	copy fasta	THOP1	chr19	2780503	2820807
THPO_chr3_184366935_184383207	1/1	a0001	353	431	93	86	190	16	44	copy fasta	THPO	chr3	184366935	184383207
THPO_chr3_184366935_184383207	0/0	a0002	353	2	2	0	0	0	0	copy fasta	THPO	chr3	184366935	184383207
THPO_chr3_184366935_184383207	0/0	a0003	353	1	0	0	1	0	0	copy fasta	THPO	chr3	184366935	184383207
THPO_chr3_184366935_184383207	0/0	a0004	353	1	0	0	1	0	0	copy fasta	THPO	chr3	184366935	184383207
THPO_chr3_184366935_184383207	0/0	a0005	353	1	1	0	0	0	0	copy fasta	THPO	chr3	184366935	184383207
THRAP3_chr1_36219443_36310357	0/0	a0001	955	174	34	44	61	8	27	copy fasta	THRAP3	chr1	36219443	36310357
THRAP3_chr1_36219443_36310357	1/1	a0002	955	52	36	5	2	2	5	copy fasta	THRAP3	chr1	36219443	36310357
THRAP3_chr1_36219443_36310357	0/0	a0003	955	23	19	4	0	0	0	copy fasta	THRAP3	chr1	36219443	36310357
THRAP3_chr1_36219443_36310357	0/0	a0004	955	1	1	0	0	0	0	copy fasta	THRAP3	chr1	36219443	36310357
THRAP3_chr1_36219443_36310357	0/0	a0005	955	1	0	0	1	0	0	copy fasta	THRAP3	chr1	36219443	36310357
THRAP3_chr1_36219443_36310357	0/0	a0006	955	1	0	1	0	0	0	copy fasta	THRAP3	chr1	36219443	36310357
THRA_chr17_40057965_40098002	1/1	a0001	410	353	90	70	133	14	44	copy fasta	THRA	chr17	40057965	40098002
THRA_chr17_40057965_40098002	0/0	a0002	410	4	0	0	4	0	0	copy fasta	THRA	chr17	40057965	40098002
THRA_chr17_40057965_40098002	0/0	a0003	369	1	0	0	1	0	0	copy fasta	THRA	chr17	40057965	40098002
THRB_chr3_24112153_24499850	0/0	a0000	0	1	1	0	0	0	0	copy fasta	THRB	chr3	24112153	24499850
THRB_chr3_24112153_24499850	1/1	a0001	461	176	76	38	40	6	14	copy fasta	THRB	chr3	24112153	24499850
THRB_chr3_24112153_24499850	0/0	a0002	461	1	1	0	0	0	0	copy fasta	THRB	chr3	24112153	24499850
THRSP_chr11_78058861_78073351	1/1	a0001	146	402	92	64	187	16	41	copy fasta	THRSP	chr11	78058861	78073351
THRSP_chr11_78058861_78073351	0/0	a0002	146	4	0	4	0	0	0	copy fasta	THRSP	chr11	78058861	78073351
THRSP_chr11_78058861_78073351	0/0	a0003	146	2	0	0	1	0	1	copy fasta	THRSP	chr11	78058861	78073351
THSD1_chr13_52372167_52411172	1/1	a0001	852	282	59	55	127	9	30	copy fasta	THSD1	chr13	52372167	52411172
THSD1_chr13_52372167_52411172	0/0	a0002	852	7	0	1	4	0	2	copy fasta	THSD1	chr13	52372167	52411172
THSD1_chr13_52372167_52411172	0/0	a0003	852	6	4	1	0	0	1	copy fasta	THSD1	chr13	52372167	52411172
THSD1_chr13_52372167_52411172	0/0	a0004	852	5	5	0	0	0	0	copy fasta	THSD1	chr13	52372167	52411172
THSD1_chr13_52372167_52411172	0/0	a0005	852	4	3	1	0	0	0	copy fasta	THSD1	chr13	52372167	52411172
THSD1_chr13_52372167_52411172	0/0	a0006	852	3	0	0	3	0	0	copy fasta	THSD1	chr13	52372167	52411172
THSD1_chr13_52372167_52411172	0/0	a0007	852	2	0	0	2	0	0	copy fasta	THSD1	chr13	52372167	52411172
THSD1_chr13_52372167_52411172	0/0	a0008	852	2	0	0	1	0	1	copy fasta	THSD1	chr13	52372167	52411172
THSD1_chr13_52372167_52411172	0/0	a0009	852	2	0	0	0	0	2	copy fasta	THSD1	chr13	52372167	52411172
THSD1_chr13_52372167_52411172	0/0	a0010	852	1	0	0	0	1	0	copy fasta	THSD1	chr13	52372167	52411172
THSD1_chr13_52372167_52411172	0/0	a0011	852	1	0	0	1	0	0	copy fasta	THSD1	chr13	52372167	52411172
THSD1_chr13_52372167_52411172	0/0	a0012	852	1	1	0	0	0	0	copy fasta	THSD1	chr13	52372167	52411172
THSD4_chr15_71110471_71788383	0/0	a0001	1018	98	49	20	7	4	18	copy fasta	THSD4	chr15	71110471	71788383
THSD4_chr15_71110471_71788383	0/0	a0002	1018	11	7	4	0	0	0	copy fasta	THSD4	chr15	71110471	71788383
THSD4_chr15_71110471_71788383	0/0	a0003	1018	2	0	1	1	0	0	copy fasta	THSD4	chr15	71110471	71788383
THSD4_chr15_71110471_71788383	0/0	a0004	1018	2	0	2	0	0	0	copy fasta	THSD4	chr15	71110471	71788383
THSD4_chr15_71110471_71788383	0/0	a0005	1018	1	1	0	0	0	0	copy fasta	THSD4	chr15	71110471	71788383
THSD4_chr15_71110471_71788383	0/0	a0006	1018	1	1	0	0	0	0	copy fasta	THSD4	chr15	71110471	71788383
THSD4_chr15_71110471_71788383	0/0	a0007	1018	1	0	1	0	0	0	copy fasta	THSD4	chr15	71110471	71788383
THSD7A_chr7_11365365_11837198	0/1	a0001	1657	98	47	17	27	3	3	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	a0002	1657	32	8	9	11	0	4	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	1/0	a0003	1657	10	0	1	8	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	a0004	1657	5	1	0	4	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	a0005	1657	4	0	1	1	1	1	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	a0006	1657	4	0	1	3	0	0	copy fasta	THSD7A	chr7	11365365	11837198