JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
THSD7A_chr7_11365365_11837198	0/0	a0007	1653	2	1	0	1	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	a0008	1657	2	1	1	0	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	a0009	1657	2	0	2	0	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	a0010	1659	2	1	0	1	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	a0011	1657	1	0	0	1	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	a0012	1653	1	0	0	1	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	a0013	1651	1	1	0	0	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	a0014	1657	1	1	0	0	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	a0015	1657	1	1	0	0	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	a0016	1657	1	1	0	0	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	a0017	1657	1	1	0	0	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	a0018	1657	1	0	0	0	0	1	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	a0019	1657	1	0	0	1	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	a0020	1657	1	0	1	0	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	a0021	1657	1	1	0	0	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	a0022	1657	1	0	0	1	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	a0023	1657	1	0	1	0	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	a0024	1657	1	0	0	0	0	1	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	a0025	1657	1	1	0	0	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	a0026	1659	1	0	0	1	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	a0027	1661	1	0	0	1	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	a0028	1661	1	0	0	1	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	a0029	1661	1	0	0	1	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7B_chr2_136760545_137682718	0/0	a0001	1606	32	20	1	7	1	3	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	1/0	a0002	1606	17	6	2	6	0	2	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/1	a0003	1606	14	8	3	1	0	1	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	a0004	1606	7	0	3	3	1	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	a0005	1606	6	6	0	0	0	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	a0006	1606	6	6	0	0	0	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	a0007	1606	1	1	0	0	0	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	a0008	1606	1	0	1	0	0	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	a0009	1606	1	0	1	0	0	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	a0010	1606	1	0	0	1	0	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	a0011	1606	1	0	0	1	0	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	a0012	1606	1	0	0	1	0	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	a0013	1606	1	1	0	0	0	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	a0014	1606	1	1	0	0	0	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	a0015	1606	1	1	0	0	0	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	a0016	1606	1	1	0	0	0	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	a0017	1606	1	1	0	0	0	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	a0018	1606	1	1	0	0	0	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	a0019	1606	1	1	0	0	0	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	a0020	1606	1	1	0	0	0	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	a0021	1606	1	0	1	0	0	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	a0022	1606	1	1	0	0	0	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD8_chr19_12797069_12809389	0/0	a0000	0	1	1	0	0	0	0	copy fasta	THSD8	chr19	12797069	12809389
THSD8_chr19_12797069_12809389	1/0	a0001	115	382	62	67	192	18	42	copy fasta	THSD8	chr19	12797069	12809389
THSD8_chr19_12797069_12809389	0/1	a0002	115	24	19	4	0	0	0	copy fasta	THSD8	chr19	12797069	12809389
THSD8_chr19_12797069_12809389	0/0	a0003	115	9	9	0	0	0	0	copy fasta	THSD8	chr19	12797069	12809389
THSD8_chr19_12797069_12809389	0/0	a0004	115	2	2	0	0	0	0	copy fasta	THSD8	chr19	12797069	12809389