JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TIAM1_chr21_31113418_31349261	0/0	a0006	1591	1	1	0	0	0	0	copy fasta	TIAM1	chr21	31113418	31349261
TIAM1_chr21_31113418_31349261	0/0	a0007	1591	1	1	0	0	0	0	copy fasta	TIAM1	chr21	31113418	31349261
TIAM1_chr21_31113418_31349261	0/0	a0008	1591	1	1	0	0	0	0	copy fasta	TIAM1	chr21	31113418	31349261
TIAM1_chr21_31113418_31349261	0/0	a0009	1591	1	1	0	0	0	0	copy fasta	TIAM1	chr21	31113418	31349261
TIAM1_chr21_31113418_31349261	0/1	a0010	1591	1	0	0	0	0	0	copy fasta	TIAM1	chr21	31113418	31349261
TIAM1_chr21_31113418_31349261	0/0	a0011	1591	1	0	1	0	0	0	copy fasta	TIAM1	chr21	31113418	31349261
TIAM1_chr21_31113418_31349261	0/0	a0012	1591	1	0	0	0	0	1	copy fasta	TIAM1	chr21	31113418	31349261
TIAM1_chr21_31113418_31349261	0/0	a0013	1591	1	0	0	1	0	0	copy fasta	TIAM1	chr21	31113418	31349261
TIAM2_chr6_154990315_155262723	0/0	a0001	1701	137	51	36	30	4	16	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	a0002	1701	40	7	15	12	0	6	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/1	a0003	1701	8	0	4	1	2	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	a0004	1701	4	0	0	3	0	1	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	a0005	1701	4	4	0	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	a0006	1701	3	2	1	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	a0007	1701	3	0	0	3	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	a0008	1701	2	0	0	2	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	a0009	1701	2	2	0	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	a0010	1701	2	2	0	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	a0011	1701	2	0	0	2	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	1/0	a0012	1701	2	1	0	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	a0013	1701	2	1	1	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	a0014	1701	2	2	0	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	a0015	1701	1	1	0	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	a0016	1701	1	0	0	0	0	1	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	a0017	1701	1	0	0	1	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	a0018	1701	1	0	1	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	a0019	1701	1	0	0	0	0	1	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	a0020	1701	1	1	0	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	a0021	1701	1	0	0	0	0	1	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	a0022	1701	1	0	0	0	0	1	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	a0023	1701	1	0	0	1	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	a0024	1701	1	1	0	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	a0025	1492	1	0	0	0	0	1	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	a0026	1701	1	1	0	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	a0027	1701	1	1	0	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	a0028	1701	1	1	0	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	a0029	1701	1	1	0	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	a0030	1701	1	1	0	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	a0031	1701	1	0	0	1	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TICAM1_chr19_4810932_4836712	1/0	a0001	712	329	66	64	146	13	39	copy fasta	TICAM1	chr19	4810932	4836712
TICAM1_chr19_4810932_4836712	0/1	a0002	713	62	29	11	11	3	7	copy fasta	TICAM1	chr19	4810932	4836712
TICAM1_chr19_4810932_4836712	0/0	a0003	712	7	0	0	7	0	0	copy fasta	TICAM1	chr19	4810932	4836712
TICAM1_chr19_4810932_4836712	0/0	a0004	712	3	0	0	3	0	0	copy fasta	TICAM1	chr19	4810932	4836712
TICAM1_chr19_4810932_4836712	0/0	a0005	712	1	0	0	1	0	0	copy fasta	TICAM1	chr19	4810932	4836712
TICAM1_chr19_4810932_4836712	0/0	a0006	712	1	0	0	0	0	1	copy fasta	TICAM1	chr19	4810932	4836712
TICAM1_chr19_4810932_4836712	0/0	a0007	712	1	0	0	1	0	0	copy fasta	TICAM1	chr19	4810932	4836712
TICAM1_chr19_4810932_4836712	0/0	a0008	713	1	1	0	0	0	0	copy fasta	TICAM1	chr19	4810932	4836712
TICAM1_chr19_4810932_4836712	0/0	a0009	712	1	1	0	0	0	0	copy fasta	TICAM1	chr19	4810932	4836712
TICAM1_chr19_4810932_4836712	0/0	a0010	712	1	0	0	1	0	0	copy fasta	TICAM1	chr19	4810932	4836712
TICAM1_chr19_4810932_4836712	0/0	a0011	712	1	1	0	0	0	0	copy fasta	TICAM1	chr19	4810932	4836712