JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TICAM1_chr19_4810932_4836712	0/0	a0012	712	1	1	0	0	0	0	copy fasta	TICAM1	chr19	4810932	4836712
TICAM1_chr19_4810932_4836712	0/0	a0013	712	1	0	0	0	0	1	copy fasta	TICAM1	chr19	4810932	4836712
TICAM1_chr19_4810932_4836712	0/0	a0014	713	1	1	0	0	0	0	copy fasta	TICAM1	chr19	4810932	4836712
TICAM1_chr19_4810932_4836712	0/0	a0015	712	1	0	1	0	0	0	copy fasta	TICAM1	chr19	4810932	4836712
TICAM2_chr5_115573496_115607479	1/1	a0001	235	392	87	63	182	14	44	copy fasta	TICAM2	chr5	115573496	115607479
TICAM2_chr5_115573496_115607479	0/0	a0002	235	5	5	0	0	0	0	copy fasta	TICAM2	chr5	115573496	115607479
TICAM2_chr5_115573496_115607479	0/0	a0003	235	3	3	0	0	0	0	copy fasta	TICAM2	chr5	115573496	115607479
TICAM2_chr5_115573496_115607479	0/0	a0004	235	1	1	0	0	0	0	copy fasta	TICAM2	chr5	115573496	115607479
TICAM2_chr5_115573496_115607479	0/0	a0005	235	1	0	1	0	0	0	copy fasta	TICAM2	chr5	115573496	115607479
TICRR_chr15_89570469_89633023	0/1	a0001	1910	83	17	17	32	5	11	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	a0002	1910	79	3	14	43	5	14	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	a0003	1910	33	29	4	0	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	1/0	a0004	1910	32	1	5	15	3	7	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	a0005	1910	27	0	4	23	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	a0006	1910	16	1	1	11	2	1	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	a0007	1910	14	12	2	0	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	a0008	1910	7	1	5	1	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	a0009	1910	6	0	0	6	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	a0010	1910	5	5	0	0	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	a0011	1910	4	1	1	2	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	a0012	1910	3	1	2	0	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	a0013	1910	2	2	0	0	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	a0014	1910	2	0	2	0	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	a0015	1910	2	1	0	0	1	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	a0016	1910	2	2	0	0	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	a0017	1910	2	2	0	0	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	a0018	1910	1	0	0	1	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	a0019	1910	1	1	0	0	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	a0020	1910	1	0	0	1	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	a0021	1910	1	0	0	1	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	a0022	1910	1	0	0	1	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	a0023	1910	1	1	0	0	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	a0024	1910	1	0	0	1	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	a0025	1910	1	0	1	0	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	a0026	1910	1	0	0	1	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	a0027	1910	1	0	0	1	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	a0028	1910	1	0	0	1	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	a0029	1910	1	1	0	0	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	a0030	1910	1	0	1	0	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	a0031	1910	1	0	0	0	0	1	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	a0032	1910	1	0	0	1	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	a0033	1910	1	0	0	1	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	a0034	1910	1	1	0	0	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	a0035	1910	1	0	1	0	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	a0036	1910	1	1	0	0	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	a0037	1910	1	1	0	0	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	a0038	1910	1	0	0	1	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	a0039	1910	1	0	0	1	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	a0040	1910	1	1	0	0	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	a0041	1910	1	0	0	1	0	0	copy fasta	TICRR	chr15	89570469	89633023