JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TICRR_chr15_89570469_89633023	0/0	a0042	1910	1	1	0	0	0	0	copy fasta	TICRR	chr15	89570469	89633023
TIE1_chr1_43295982_43328108	1/1	a0001	1138	385	91	70	171	12	39	copy fasta	TIE1	chr1	43295982	43328108
TIE1_chr1_43295982_43328108	0/0	a0002	1138	2	1	1	0	0	0	copy fasta	TIE1	chr1	43295982	43328108
TIE1_chr1_43295982_43328108	0/0	a0003	1138	2	0	0	2	0	0	copy fasta	TIE1	chr1	43295982	43328108
TIE1_chr1_43295982_43328108	0/0	a0004	1138	2	2	0	0	0	0	copy fasta	TIE1	chr1	43295982	43328108
TIE1_chr1_43295982_43328108	0/0	a0005	1138	1	0	0	1	0	0	copy fasta	TIE1	chr1	43295982	43328108
TIE1_chr1_43295982_43328108	0/0	a0006	1138	1	0	0	0	0	1	copy fasta	TIE1	chr1	43295982	43328108
TIE1_chr1_43295982_43328108	0/0	a0007	1138	1	0	1	0	0	0	copy fasta	TIE1	chr1	43295982	43328108
TIE1_chr1_43295982_43328108	0/0	a0008	1138	1	0	0	1	0	0	copy fasta	TIE1	chr1	43295982	43328108
TIE1_chr1_43295982_43328108	0/0	a0009	1138	1	1	0	0	0	0	copy fasta	TIE1	chr1	43295982	43328108
TIE1_chr1_43295982_43328108	0/0	a0010	1138	1	0	0	1	0	0	copy fasta	TIE1	chr1	43295982	43328108
TIE1_chr1_43295982_43328108	0/0	a0011	1138	1	1	0	0	0	0	copy fasta	TIE1	chr1	43295982	43328108
TIE1_chr1_43295982_43328108	0/0	a0012	1138	1	0	1	0	0	0	copy fasta	TIE1	chr1	43295982	43328108
TIE1_chr1_43295982_43328108	0/0	a0013	1138	1	0	1	0	0	0	copy fasta	TIE1	chr1	43295982	43328108
TIFAB_chr5_135439226_135457351	1/1	a0001	161	446	87	86	207	14	50	copy fasta	TIFAB	chr5	135439226	135457351
TIFAB_chr5_135439226_135457351	0/0	a0002	161	7	7	0	0	0	0	copy fasta	TIFAB	chr5	135439226	135457351
TIFAB_chr5_135439226_135457351	0/0	a0003	161	2	0	0	2	0	0	copy fasta	TIFAB	chr5	135439226	135457351
TIFAB_chr5_135439226_135457351	0/0	a0004	161	1	0	0	1	0	0	copy fasta	TIFAB	chr5	135439226	135457351
TIFA_chr4_112269537_112290904	1/1	a0001	184	412	88	69	209	10	34	copy fasta	TIFA	chr4	112269537	112290904
TIFA_chr4_112269537_112290904	0/0	a0002	184	6	4	1	1	0	0	copy fasta	TIFA	chr4	112269537	112290904
TIGAR_chr12_4316213_4365028	1/1	a0001	270	417	93	66	198	16	42	copy fasta	TIGAR	chr12	4316213	4365028
TIGAR_chr12_4316213_4365028	0/0	a0002	270	1	1	0	0	0	0	copy fasta	TIGAR	chr12	4316213	4365028
TIGAR_chr12_4316213_4365028	0/0	a0003	270	1	0	0	1	0	0	copy fasta	TIGAR	chr12	4316213	4365028
TIGAR_chr12_4316213_4365028	0/0	a0004	270	1	0	0	1	0	0	copy fasta	TIGAR	chr12	4316213	4365028
TIGD1_chr2_232538883_232555557	1/1	a0001	591	426	87	69	202	18	48	copy fasta	TIGD1	chr2	232538883	232555557
TIGD1_chr2_232538883_232555557	0/0	a0002	591	3	3	0	0	0	0	copy fasta	TIGD1	chr2	232538883	232555557
TIGD1_chr2_232538883_232555557	0/0	a0003	591	2	0	0	2	0	0	copy fasta	TIGD1	chr2	232538883	232555557
TIGD1_chr2_232538883_232555557	0/0	a0004	591	2	2	0	0	0	0	copy fasta	TIGD1	chr2	232538883	232555557
TIGD1_chr2_232538883_232555557	0/0	a0005	591	1	1	0	0	0	0	copy fasta	TIGD1	chr2	232538883	232555557
TIGD1_chr2_232538883_232555557	0/0	a0006	542	1	0	0	1	0	0	copy fasta	TIGD1	chr2	232538883	232555557
TIGD1_chr2_232538883_232555557	0/0	a0007	591	1	0	1	0	0	0	copy fasta	TIGD1	chr2	232538883	232555557
TIGD1_chr2_232538883_232555557	0/0	a0008	591	1	1	0	0	0	0	copy fasta	TIGD1	chr2	232538883	232555557
TIGD1_chr2_232538883_232555557	0/0	a0009	591	1	1	0	0	0	0	copy fasta	TIGD1	chr2	232538883	232555557
TIGD1_chr2_232538883_232555557	0/0	a0010	591	1	1	0	0	0	0	copy fasta	TIGD1	chr2	232538883	232555557
TIGD1_chr2_232538883_232555557	0/0	a0011	591	1	0	0	1	0	0	copy fasta	TIGD1	chr2	232538883	232555557
TIGD2_chr4_89106533_89119901	1/1	a0001	525	369	94	65	157	17	34	copy fasta	TIGD2	chr4	89106533	89119901
TIGD2_chr4_89106533_89119901	0/0	a0002	525	51	2	6	34	1	8	copy fasta	TIGD2	chr4	89106533	89119901
TIGD2_chr4_89106533_89119901	0/0	a0003	525	5	0	5	0	0	0	copy fasta	TIGD2	chr4	89106533	89119901
TIGD2_chr4_89106533_89119901	0/0	a0004	525	2	0	2	0	0	0	copy fasta	TIGD2	chr4	89106533	89119901
TIGD2_chr4_89106533_89119901	0/0	a0005	525	1	1	0	0	0	0	copy fasta	TIGD2	chr4	89106533	89119901
TIGD2_chr4_89106533_89119901	0/0	a0006	525	1	0	0	1	0	0	copy fasta	TIGD2	chr4	89106533	89119901
TIGD2_chr4_89106533_89119901	0/0	a0007	525	1	1	0	0	0	0	copy fasta	TIGD2	chr4	89106533	89119901
TIGD3_chr11_65349751_65362613	1/1	a0001	471	347	58	58	174	16	39	copy fasta	TIGD3	chr11	65349751	65362613
TIGD3_chr11_65349751_65362613	0/0	a0002	471	43	34	3	2	1	3	copy fasta	TIGD3	chr11	65349751	65362613
TIGD3_chr11_65349751_65362613	0/0	a0003	471	2	0	1	0	1	0	copy fasta	TIGD3	chr11	65349751	65362613
TIGD4_chr4_152764354_152784730	0/0	a0001	512	287	59	46	144	7	31	copy fasta	TIGD4	chr4	152764354	152784730
TIGD4_chr4_152764354_152784730	1/1	a0002	512	124	29	18	51	7	17	copy fasta	TIGD4	chr4	152764354	152784730
TIGD4_chr4_152764354_152784730	0/0	a0003	512	6	5	1	0	0	0	copy fasta	TIGD4	chr4	152764354	152784730
TIGD4_chr4_152764354_152784730	0/0	a0004	512	3	3	0	0	0	0	copy fasta	TIGD4	chr4	152764354	152784730
TIGD4_chr4_152764354_152784730	0/0	a0005	512	1	0	0	1	0	0	copy fasta	TIGD4	chr4	152764354	152784730