JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
BHLHE23_chr20_63000927_63011964	1/1	a0001	241	428	86	80	198	16	46	copy fasta	BHLHE23	chr20	63000927	63011964
BHLHE23_chr20_63000927_63011964	0/0	a0002	241	10	8	2	0	0	0	copy fasta	BHLHE23	chr20	63000927	63011964
BHLHE23_chr20_63000927_63011964	0/0	a0003	242	3	1	0	2	0	0	copy fasta	BHLHE23	chr20	63000927	63011964
BHLHE23_chr20_63000927_63011964	0/0	a0004	241	2	2	0	0	0	0	copy fasta	BHLHE23	chr20	63000927	63011964
BHLHE23_chr20_63000927_63011964	0/0	a0005	241	1	1	0	0	0	0	copy fasta	BHLHE23	chr20	63000927	63011964
BHLHE23_chr20_63000927_63011964	0/0	a0006	241	1	1	0	0	0	0	copy fasta	BHLHE23	chr20	63000927	63011964
BHLHE23_chr20_63000927_63011964	0/0	a0007	241	1	1	0	0	0	0	copy fasta	BHLHE23	chr20	63000927	63011964
BHLHE40_chr3_4974437_4990323	1/1	a0001	412	432	92	82	198	18	40	copy fasta	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	a0002	412	2	2	0	0	0	0	copy fasta	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	a0003	412	1	0	0	1	0	0	copy fasta	BHLHE40	chr3	4974437	4990323
BHLHE40_chr3_4974437_4990323	0/0	a0004	412	1	0	0	1	0	0	copy fasta	BHLHE40	chr3	4974437	4990323
BHLHE41_chr12_26115030_26130037	1/0	a0001	482	256	70	36	104	12	33	copy fasta	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/1	a0002	482	139	7	33	81	4	13	copy fasta	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	a0003	482	15	14	1	0	0	0	copy fasta	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	a0004	482	6	6	0	0	0	0	copy fasta	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	a0005	486	2	0	2	0	0	0	copy fasta	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	a0006	482	1	1	0	0	0	0	copy fasta	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	a0007	482	1	0	0	1	0	0	copy fasta	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	a0008	482	1	0	0	1	0	0	copy fasta	BHLHE41	chr12	26115030	26130037
BHLHE41_chr12_26115030_26130037	0/0	a0009	319	1	0	0	1	0	0	copy fasta	BHLHE41	chr12	26115030	26130037
BHMT2_chr5_79064767_79095069	1/1	a0001	363	376	81	64	169	14	46	copy fasta	BHMT2	chr5	79064767	79095069
BHMT2_chr5_79064767_79095069	0/0	a0002	363	10	9	1	0	0	0	copy fasta	BHMT2	chr5	79064767	79095069
BHMT2_chr5_79064767_79095069	0/0	a0003	363	1	1	0	0	0	0	copy fasta	BHMT2	chr5	79064767	79095069
BHMT2_chr5_79064767_79095069	0/0	a0004	133	1	0	0	1	0	0	copy fasta	BHMT2	chr5	79064767	79095069
BHMT2_chr5_79064767_79095069	0/0	a0005	363	1	1	0	0	0	0	copy fasta	BHMT2	chr5	79064767	79095069
BHMT2_chr5_79064767_79095069	0/0	a0006	363	1	0	1	0	0	0	copy fasta	BHMT2	chr5	79064767	79095069
BHMT_chr5_79106809_79137288	1/0	a0001	406	304	75	38	147	13	30	copy fasta	BHMT	chr5	79106809	79137288
BHMT_chr5_79106809_79137288	0/0	a0002	406	124	19	36	54	3	12	copy fasta	BHMT	chr5	79106809	79137288
BHMT_chr5_79106809_79137288	0/1	a0003	5	1	0	0	0	0	0	copy fasta	BHMT	chr5	79106809	79137288
BHMT_chr5_79106809_79137288	0/0	a0004	406	1	0	0	1	0	0	copy fasta	BHMT	chr5	79106809	79137288
BHMT_chr5_79106809_79137288	0/0	a0005	406	1	1	0	0	0	0	copy fasta	BHMT	chr5	79106809	79137288
BHMT_chr5_79106809_79137288	0/0	a0006	406	1	1	0	0	0	0	copy fasta	BHMT	chr5	79106809	79137288
BICC1_chr10_58507872_58836435	0/1	a0001	974	60	21	13	14	7	4	copy fasta	BICC1	chr10	58507872	58836435
BICC1_chr10_58507872_58836435	1/0	a0002	974	57	24	14	14	1	3	copy fasta	BICC1	chr10	58507872	58836435
BICC1_chr10_58507872_58836435	0/0	a0003	974	7	7	0	0	0	0	copy fasta	BICC1	chr10	58507872	58836435
BICC1_chr10_58507872_58836435	0/0	a0004	974	4	4	0	0	0	0	copy fasta	BICC1	chr10	58507872	58836435
BICC1_chr10_58507872_58836435	0/0	a0005	974	1	1	0	0	0	0	copy fasta	BICC1	chr10	58507872	58836435
BICC1_chr10_58507872_58836435	0/0	a0006	974	1	1	0	0	0	0	copy fasta	BICC1	chr10	58507872	58836435
BICC1_chr10_58507872_58836435	0/0	a0007	974	1	0	1	0	0	0	copy fasta	BICC1	chr10	58507872	58836435
BICC1_chr10_58507872_58836435	0/0	a0008	974	1	0	0	0	0	1	copy fasta	BICC1	chr10	58507872	58836435
BICD1_chr12_32101847_32388633	1/1	a0001	975	289	84	48	112	9	34	copy fasta	BICD1	chr12	32101847	32388633
BICD1_chr12_32101847_32388633	0/0	a0002	975	1	0	0	0	1	0	copy fasta	BICD1	chr12	32101847	32388633
BICD2_chr9_92706363_92769833	1/1	a0001	855	351	71	65	162	17	34	copy fasta	BICD2	chr9	92706363	92769833
BICD2_chr9_92706363_92769833	0/0	a0002	855	2	2	0	0	0	0	copy fasta	BICD2	chr9	92706363	92769833
BICD2_chr9_92706363_92769833	0/0	a0003	855	1	0	0	1	0	0	copy fasta	BICD2	chr9	92706363	92769833
BICD2_chr9_92706363_92769833	0/0	a0004	855	1	0	0	0	0	1	copy fasta	BICD2	chr9	92706363	92769833
BICD2_chr9_92706363_92769833	0/0	a0005	855	1	0	1	0	0	0	copy fasta	BICD2	chr9	92706363	92769833
BICD2_chr9_92706363_92769833	0/0	a0006	855	1	1	0	0	0	0	copy fasta	BICD2	chr9	92706363	92769833
BICD2_chr9_92706363_92769833	0/0	a0007	855	1	0	0	1	0	0	copy fasta	BICD2	chr9	92706363	92769833
BICD2_chr9_92706363_92769833	0/0	a0008	855	1	0	0	0	1	0	copy fasta	BICD2	chr9	92706363	92769833