JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TIGD4_chr4_152764354_152784730	0/0	a0006	512	1	0	0	1	0	0	copy fasta	TIGD4	chr4	152764354	152784730
TIGD4_chr4_152764354_152784730	0/0	a0007	512	1	0	0	1	0	0	copy fasta	TIGD4	chr4	152764354	152784730
TIGD4_chr4_152764354_152784730	0/0	a0008	512	1	0	1	0	0	0	copy fasta	TIGD4	chr4	152764354	152784730
TIGD5_chr8_143592831_143608224	0/1	a0001	642	231	37	48	99	11	35	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	a0002	642	186	59	23	89	2	13	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	a0003	642	10	0	7	0	3	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	a0004	642	2	0	0	2	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	a0005	642	1	1	0	0	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	a0006	642	1	0	1	0	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	a0007	642	1	1	0	0	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	a0008	642	1	0	0	1	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	a0009	642	1	0	0	1	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	a0010	642	1	0	0	1	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	a0011	642	1	0	0	1	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	a0012	642	1	0	1	0	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD6_chr5_149988118_150005654	0/1	a0001	354	183	29	36	84	7	26	copy fasta	TIGD6	chr5	149988118	150005654
TIGD6_chr5_149988118_150005654	1/0	a0002	521	132	21	15	75	4	16	copy fasta	TIGD6	chr5	149988118	150005654
TIGD6_chr5_149988118_150005654	0/0	a0003	521	56	8	18	25	2	3	copy fasta	TIGD6	chr5	149988118	150005654
TIGD6_chr5_149988118_150005654	0/0	a0004	69	33	28	5	0	0	0	copy fasta	TIGD6	chr5	149988118	150005654
TIGD6_chr5_149988118_150005654	0/0	a0005	521	16	0	2	14	0	0	copy fasta	TIGD6	chr5	149988118	150005654
TIGD6_chr5_149988118_150005654	0/0	a0006	69	3	3	0	0	0	0	copy fasta	TIGD6	chr5	149988118	150005654
TIGD6_chr5_149988118_150005654	0/0	a0007	521	3	0	0	3	0	0	copy fasta	TIGD6	chr5	149988118	150005654
TIGD6_chr5_149988118_150005654	0/0	a0008	521	2	2	0	0	0	0	copy fasta	TIGD6	chr5	149988118	150005654
TIGD6_chr5_149988118_150005654	0/0	a0009	354	2	2	0	0	0	0	copy fasta	TIGD6	chr5	149988118	150005654
TIGD6_chr5_149988118_150005654	0/0	a0010	354	1	1	0	0	0	0	copy fasta	TIGD6	chr5	149988118	150005654
TIGD6_chr5_149988118_150005654	0/0	a0011	521	1	0	0	0	1	0	copy fasta	TIGD6	chr5	149988118	150005654
TIGD6_chr5_149988118_150005654	0/0	a0012	354	1	0	0	0	0	1	copy fasta	TIGD6	chr5	149988118	150005654
TIGD6_chr5_149988118_150005654	0/0	a0013	354	1	0	0	1	0	0	copy fasta	TIGD6	chr5	149988118	150005654
TIGD6_chr5_149988118_150005654	0/0	a0014	354	1	0	0	1	0	0	copy fasta	TIGD6	chr5	149988118	150005654
TIGD6_chr5_149988118_150005654	0/0	a0015	354	1	0	0	1	0	0	copy fasta	TIGD6	chr5	149988118	150005654
TIGD7_chr16_3293808_3310430	1/1	a0001	549	381	88	74	159	16	42	copy fasta	TIGD7	chr16	3293808	3310430
TIGD7_chr16_3293808_3310430	0/0	a0002	549	5	5	0	0	0	0	copy fasta	TIGD7	chr16	3293808	3310430
TIGD7_chr16_3293808_3310430	0/0	a0003	549	1	0	0	1	0	0	copy fasta	TIGD7	chr16	3293808	3310430
TIGD7_chr16_3293808_3310430	0/0	a0004	549	1	1	0	0	0	0	copy fasta	TIGD7	chr16	3293808	3310430
TIGIT_chr3_114289028_114315288	1/1	a0001	244	422	96	80	187	16	41	copy fasta	TIGIT	chr3	114289028	114315288
TIGIT_chr3_114289028_114315288	0/0	a0002	244	1	0	0	0	0	1	copy fasta	TIGIT	chr3	114289028	114315288
TIGIT_chr3_114289028_114315288	0/0	a0003	15	1	0	0	1	0	0	copy fasta	TIGIT	chr3	114289028	114315288
TIMD4_chr5_156914292_156968226	0/1	a0001	378	289	73	60	112	16	27	copy fasta	TIMD4	chr5	156914292	156968226
TIMD4_chr5_156914292_156968226	0/0	a0002	378	7	4	3	0	0	0	copy fasta	TIMD4	chr5	156914292	156968226
TIMD4_chr5_156914292_156968226	0/0	a0003	378	6	6	0	0	0	0	copy fasta	TIMD4	chr5	156914292	156968226
TIMD4_chr5_156914292_156968226	1/0	a0004	378	4	0	3	0	0	0	copy fasta	TIMD4	chr5	156914292	156968226
TIMD4_chr5_156914292_156968226	0/0	a0005	378	2	2	0	0	0	0	copy fasta	TIMD4	chr5	156914292	156968226
TIMD4_chr5_156914292_156968226	0/0	a0006	378	1	1	0	0	0	0	copy fasta	TIMD4	chr5	156914292	156968226
TIMD4_chr5_156914292_156968226	0/0	a0007	378	1	1	0	0	0	0	copy fasta	TIMD4	chr5	156914292	156968226
TIMD4_chr5_156914292_156968226	0/0	a0008	378	1	1	0	0	0	0	copy fasta	TIMD4	chr5	156914292	156968226
TIMD4_chr5_156914292_156968226	0/0	a0009	378	1	0	0	0	0	1	copy fasta	TIMD4	chr5	156914292	156968226
TIMELESS_chr12_56411363_56454426	0/1	a0001	1208	197	23	40	107	4	22	copy fasta	TIMELESS	chr12	56411363	56454426
TIMELESS_chr12_56411363_56454426	0/0	a0002	1208	131	26	20	63	8	14	copy fasta	TIMELESS	chr12	56411363	56454426
TIMELESS_chr12_56411363_56454426	1/0	a0003	1208	20	16	0	2	1	0	copy fasta	TIMELESS	chr12	56411363	56454426
TIMELESS_chr12_56411363_56454426	0/0	a0004	1208	18	17	1	0	0	0	copy fasta	TIMELESS	chr12	56411363	56454426