JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TIMELESS_chr12_56411363_56454426	0/0	a0005	1208	12	0	9	3	0	0	copy fasta	TIMELESS	chr12	56411363	56454426
TIMELESS_chr12_56411363_56454426	0/0	a0006	1208	7	1	3	0	2	1	copy fasta	TIMELESS	chr12	56411363	56454426
TIMELESS_chr12_56411363_56454426	0/0	a0007	1208	3	0	0	0	1	2	copy fasta	TIMELESS	chr12	56411363	56454426
TIMELESS_chr12_56411363_56454426	0/0	a0008	1208	1	1	0	0	0	0	copy fasta	TIMELESS	chr12	56411363	56454426
TIMELESS_chr12_56411363_56454426	0/0	a0009	1208	1	0	0	1	0	0	copy fasta	TIMELESS	chr12	56411363	56454426
TIMELESS_chr12_56411363_56454426	0/0	a0010	1208	1	0	1	0	0	0	copy fasta	TIMELESS	chr12	56411363	56454426
TIMELESS_chr12_56411363_56454426	0/0	a0011	1208	1	0	0	1	0	0	copy fasta	TIMELESS	chr12	56411363	56454426
TIMELESS_chr12_56411363_56454426	0/0	a0012	1208	1	0	0	0	0	1	copy fasta	TIMELESS	chr12	56411363	56454426
TIMELESS_chr12_56411363_56454426	0/0	a0013	1208	1	0	0	1	0	0	copy fasta	TIMELESS	chr12	56411363	56454426
TIMELESS_chr12_56411363_56454426	0/0	a0014	1208	1	1	0	0	0	0	copy fasta	TIMELESS	chr12	56411363	56454426
TIMELESS_chr12_56411363_56454426	0/0	a0015	1208	1	0	0	1	0	0	copy fasta	TIMELESS	chr12	56411363	56454426
TIMELESS_chr12_56411363_56454426	0/0	a0016	1208	1	1	0	0	0	0	copy fasta	TIMELESS	chr12	56411363	56454426
TIMELESS_chr12_56411363_56454426	0/0	a0017	1208	1	0	0	0	0	1	copy fasta	TIMELESS	chr12	56411363	56454426
TIMELESS_chr12_56411363_56454426	0/0	a0018	1208	1	1	0	0	0	0	copy fasta	TIMELESS	chr12	56411363	56454426
TIMELESS_chr12_56411363_56454426	0/0	a0019	1208	1	0	0	1	0	0	copy fasta	TIMELESS	chr12	56411363	56454426
TIMELESS_chr12_56411363_56454426	0/0	a0020	1208	1	1	0	0	0	0	copy fasta	TIMELESS	chr12	56411363	56454426
TIMELESS_chr12_56411363_56454426	0/0	a0021	1208	1	0	0	0	0	1	copy fasta	TIMELESS	chr12	56411363	56454426
TIMM10B_chr11_6476501_6489681	0/0	a0000	0	1	1	0	0	0	0	copy fasta	TIMM10B	chr11	6476501	6489681
TIMM10B_chr11_6476501_6489681	1/1	a0001	103	391	87	83	159	18	42	copy fasta	TIMM10B	chr11	6476501	6489681
TIMM10B_chr11_6476501_6489681	0/0	a0002	103	8	2	1	3	0	2	copy fasta	TIMM10B	chr11	6476501	6489681
TIMM10_chr11_57523464_57535754	1/1	a0001	90	378	92	82	152	14	36	copy fasta	TIMM10	chr11	57523464	57535754
TIMM13_chr19_2420625_2432586	1/1	a0001	95	302	80	68	100	14	38	copy fasta	TIMM13	chr19	2420625	2432586
TIMM17A_chr1_201950503_201975664	1/1	a0001	171	442	96	79	213	14	38	copy fasta	TIMM17A	chr1	201950503	201975664
TIMM17A_chr1_201950503_201975664	0/0	a0002	171	25	2	7	9	4	3	copy fasta	TIMM17A	chr1	201950503	201975664
TIMM17A_chr1_201950503_201975664	0/0	a0003	171	1	0	0	0	0	1	copy fasta	TIMM17A	chr1	201950503	201975664
TIMM17B_chrX_48888449_48902768	0/0	a0000	0	1	1	0	0	0	0	copy fasta	TIMM17B	chrX	48888449	48902768
TIMM17B_chrX_48888449_48902768	1/1	a0001	172	296	73	58	122	13	28	copy fasta	TIMM17B	chrX	48888449	48902768
TIMM17B_chrX_48888449_48902768	0/0	a0002	54	1	0	0	1	0	0	copy fasta	TIMM17B	chrX	48888449	48902768
TIMM17B_chrX_48888449_48902768	0/0	a0003	172	1	0	0	1	0	0	copy fasta	TIMM17B	chrX	48888449	48902768
TIMM17B_chrX_48888449_48902768	0/0	a0004	156	1	0	0	1	0	0	copy fasta	TIMM17B	chrX	48888449	48902768
TIMM17B_chrX_48888449_48902768	0/0	a0005	126	1	0	0	1	0	0	copy fasta	TIMM17B	chrX	48888449	48902768
TIMM21_chr18_74143523_74165531	1/1	a0001	248	347	73	65	148	16	43	copy fasta	TIMM21	chr18	74143523	74165531
TIMM21_chr18_74143523_74165531	0/0	a0002	248	52	17	5	26	0	4	copy fasta	TIMM21	chr18	74143523	74165531
TIMM21_chr18_74143523_74165531	0/0	a0003	248	9	0	0	9	0	0	copy fasta	TIMM21	chr18	74143523	74165531
TIMM21_chr18_74143523_74165531	0/0	a0004	248	1	0	0	1	0	0	copy fasta	TIMM21	chr18	74143523	74165531
TIMM21_chr18_74143523_74165531	0/0	a0005	248	1	0	0	0	0	1	copy fasta	TIMM21	chr18	74143523	74165531
TIMM22_chr17_992129_1008671	0/1	a0001	194	438	99	78	196	16	48	copy fasta	TIMM22	chr17	992129	1008671
TIMM22_chr17_992129_1008671	0/0	a0002	194	1	1	0	0	0	0	copy fasta	TIMM22	chr17	992129	1008671
TIMM23B_chr10_49937053_49979850	0/1	a0001	188	286	90	57	94	12	32	copy fasta	TIMM23B	chr10	49937053	49979850
TIMM23B_chr10_49937053_49979850	1/0	a0002	188	87	5	15	57	4	5	copy fasta	TIMM23B	chr10	49937053	49979850
TIMM23B_chr10_49937053_49979850	0/0	a0003	126	1	0	0	1	0	0	copy fasta	TIMM23B	chr10	49937053	49979850
TIMM23B_chr10_49937053_49979850	0/0	a0004	188	1	1	0	0	0	0	copy fasta	TIMM23B	chr10	49937053	49979850
TIMM23B_chr10_49937053_49979850	0/0	a0005	188	1	0	0	0	0	1	copy fasta	TIMM23B	chr10	49937053	49979850
TIMM23_chr10_45967489_46008742	1/1	a0001	209	398	84	72	184	16	40	copy fasta	TIMM23	chr10	45967489	46008742
TIMM23_chr10_45967489_46008742	0/0	a0002	209	1	1	0	0	0	0	copy fasta	TIMM23	chr10	45967489	46008742
TIMM23_chr10_45967489_46008742	0/0	a0003	209	1	1	0	0	0	0	copy fasta	TIMM23	chr10	45967489	46008742
TIMM29_chr19_10923811_10935254	1/1	a0001	260	407	81	74	192	14	44	copy fasta	TIMM29	chr19	10923811	10935254
TIMM29_chr19_10923811_10935254	0/0	a0002	260	2	0	0	2	0	0	copy fasta	TIMM29	chr19	10923811	10935254
TIMM29_chr19_10923811_10935254	0/0	a0003	260	1	1	0	0	0	0	copy fasta	TIMM29	chr19	10923811	10935254
TIMM29_chr19_10923811_10935254	0/0	a0004	260	1	0	0	1	0	0	copy fasta	TIMM29	chr19	10923811	10935254