JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TIMM29_chr19_10923811_10935254	0/0	a0005	260	1	0	0	1	0	0	copy fasta	TIMM29	chr19	10923811	10935254
TIMM44_chr19_7921718_7948666	1/1	a0001	452	370	88	73	147	15	45	copy fasta	TIMM44	chr19	7921718	7948666
TIMM44_chr19_7921718_7948666	0/0	a0002	452	6	1	5	0	0	0	copy fasta	TIMM44	chr19	7921718	7948666
TIMM44_chr19_7921718_7948666	0/0	a0003	452	4	0	3	0	1	0	copy fasta	TIMM44	chr19	7921718	7948666
TIMM44_chr19_7921718_7948666	0/0	a0004	452	1	0	0	0	0	1	copy fasta	TIMM44	chr19	7921718	7948666
TIMM44_chr19_7921718_7948666	0/0	a0005	452	1	1	0	0	0	0	copy fasta	TIMM44	chr19	7921718	7948666
TIMM44_chr19_7921718_7948666	0/0	a0006	452	1	0	0	1	0	0	copy fasta	TIMM44	chr19	7921718	7948666
TIMM44_chr19_7921718_7948666	0/0	a0007	452	1	0	1	0	0	0	copy fasta	TIMM44	chr19	7921718	7948666
TIMM50_chr19_39475838_39498779	1/1	a0001	353	428	86	73	207	16	44	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	a0002	353	3	3	0	0	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	a0003	353	1	0	0	1	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	a0004	353	1	0	1	0	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	a0005	353	1	1	0	0	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM8A_chrX_101340661_101353742	1/1	a0001	97	312	76	50	141	13	30	copy fasta	TIMM8A	chrX	101340661	101353742
TIMM8A_chrX_101340661_101353742	0/0	a0002	59	1	0	0	1	0	0	copy fasta	TIMM8A	chrX	101340661	101353742
TIMM8B_chr11_112079800_112091756	1/1	a0001	83	394	98	74	178	10	32	copy fasta	TIMM8B	chr11	112079800	112091756
TIMM8B_chr11_112079800_112091756	0/0	a0002	83	2	0	2	0	0	0	copy fasta	TIMM8B	chr11	112079800	112091756
TIMM9_chr14_58403495_58432531	1/1	a0001	89	378	88	62	180	8	38	copy fasta	TIMM9	chr14	58403495	58432531
TIMMDC1_chr3_119493547_119530090	0/0	a0001	285	348	38	73	186	14	37	copy fasta	TIMMDC1	chr3	119493547	119530090
TIMMDC1_chr3_119493547_119530090	0/0	a0002	285	41	32	4	5	0	0	copy fasta	TIMMDC1	chr3	119493547	119530090
TIMMDC1_chr3_119493547_119530090	0/0	a0003	285	30	20	0	1	0	9	copy fasta	TIMMDC1	chr3	119493547	119530090
TIMMDC1_chr3_119493547_119530090	0/0	a0004	285	5	0	3	0	0	2	copy fasta	TIMMDC1	chr3	119493547	119530090
TIMMDC1_chr3_119493547_119530090	0/0	a0005	285	2	0	0	2	0	0	copy fasta	TIMMDC1	chr3	119493547	119530090
TIMMDC1_chr3_119493547_119530090	0/0	a0006	285	1	1	0	0	0	0	copy fasta	TIMMDC1	chr3	119493547	119530090
TIMMDC1_chr3_119493547_119530090	0/0	a0007	285	1	1	0	0	0	0	copy fasta	TIMMDC1	chr3	119493547	119530090
TIMP1_chrX_47577436_47591789	1/1	a0001	207	318	78	56	139	13	30	copy fasta	TIMP1	chrX	47577436	47591789
TIMP1_chrX_47577436_47591789	0/0	a0002	207	3	0	0	3	0	0	copy fasta	TIMP1	chrX	47577436	47591789
TIMP1_chrX_47577436_47591789	0/0	a0003	61	1	0	0	1	0	0	copy fasta	TIMP1	chrX	47577436	47591789
TIMP1_chrX_47577436_47591789	0/0	a0004	207	1	0	0	1	0	0	copy fasta	TIMP1	chrX	47577436	47591789
TIMP1_chrX_47577436_47591789	0/0	a0005	207	1	0	0	1	0	0	copy fasta	TIMP1	chrX	47577436	47591789
TIMP1_chrX_47577436_47591789	0/0	a0006	207	1	0	0	1	0	0	copy fasta	TIMP1	chrX	47577436	47591789
TIMP1_chrX_47577436_47591789	0/0	a0007	207	1	0	0	1	0	0	copy fasta	TIMP1	chrX	47577436	47591789
TIMP1_chrX_47577436_47591789	0/0	a0008	207	1	0	1	0	0	0	copy fasta	TIMP1	chrX	47577436	47591789
TIMP2_chr17_78847977_78930387	1/1	a0001	220	315	90	50	123	10	40	copy fasta	TIMP2	chr17	78847977	78930387
TIMP2_chr17_78847977_78930387	0/0	a0002	220	1	0	0	1	0	0	copy fasta	TIMP2	chr17	78847977	78930387
TIMP3_chr22_32796705_32868041	1/1	a0001	211	368	92	70	150	14	40	copy fasta	TIMP3	chr22	32796705	32868041
TIMP4_chr3_12148068_12163912	1/1	a0001	224	410	95	72	191	12	38	copy fasta	TIMP4	chr3	12148068	12163912
TIMP4_chr3_12148068_12163912	0/0	a0002	224	2	2	0	0	0	0	copy fasta	TIMP4	chr3	12148068	12163912
TIMP4_chr3_12148068_12163912	0/0	a0003	224	1	1	0	0	0	0	copy fasta	TIMP4	chr3	12148068	12163912
TIMP4_chr3_12148068_12163912	0/0	a0004	224	1	0	0	1	0	0	copy fasta	TIMP4	chr3	12148068	12163912
TINAGL1_chr1_31571515_31592686	1/1	a0001	467	437	95	82	200	12	46	copy fasta	TINAGL1	chr1	31571515	31592686
TINAGL1_chr1_31571515_31592686	0/0	a0002	90	1	0	0	1	0	0	copy fasta	TINAGL1	chr1	31571515	31592686
TINAGL1_chr1_31571515_31592686	0/0	a0003	467	1	1	0	0	0	0	copy fasta	TINAGL1	chr1	31571515	31592686
TINAGL1_chr1_31571515_31592686	0/0	a0004	467	1	0	0	1	0	0	copy fasta	TINAGL1	chr1	31571515	31592686
TINAG_chr6_54303441_54395142	0/1	a0001	476	178	42	33	86	5	11	copy fasta	TINAG	chr6	54303441	54395142
TINAG_chr6_54303441_54395142	0/0	a0002	476	64	8	2	49	0	5	copy fasta	TINAG	chr6	54303441	54395142
TINAG_chr6_54303441_54395142	1/0	a0003	476	62	11	17	21	1	11	copy fasta	TINAG	chr6	54303441	54395142
TINAG_chr6_54303441_54395142	0/0	a0004	476	17	1	4	8	2	2	copy fasta	TINAG	chr6	54303441	54395142
TINAG_chr6_54303441_54395142	0/0	a0005	476	13	5	2	1	1	4	copy fasta	TINAG	chr6	54303441	54395142
TINAG_chr6_54303441_54395142	0/0	a0006	476	6	6	0	0	0	0	copy fasta	TINAG	chr6	54303441	54395142