JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TIRAP_chr11_126278093_126299933	0/0	a0008	221	1	0	1	0	0	0	copy fasta	TIRAP	chr11	126278093	126299933
TIRAP_chr11_126278093_126299933	0/0	a0009	221	1	0	0	1	0	0	copy fasta	TIRAP	chr11	126278093	126299933
TIRAP_chr11_126278093_126299933	0/0	a0010	221	1	0	0	1	0	0	copy fasta	TIRAP	chr11	126278093	126299933
TIRAP_chr11_126278093_126299933	0/0	a0011	221	1	0	0	0	0	1	copy fasta	TIRAP	chr11	126278093	126299933
TJAP1_chr6_43472570_43511554	1/1	a0001	557	275	83	60	78	14	38	copy fasta	TJAP1	chr6	43472570	43511554
TJAP1_chr6_43472570_43511554	0/0	a0002	557	10	9	0	0	0	1	copy fasta	TJAP1	chr6	43472570	43511554
TJAP1_chr6_43472570_43511554	0/0	a0003	557	1	0	0	0	0	1	copy fasta	TJAP1	chr6	43472570	43511554
TJAP1_chr6_43472570_43511554	0/0	a0004	557	1	1	0	0	0	0	copy fasta	TJAP1	chr6	43472570	43511554
TJAP1_chr6_43472570_43511554	0/0	a0005	557	1	1	0	0	0	0	copy fasta	TJAP1	chr6	43472570	43511554
TJP1_chr15_29695152_29827468	0/1	a0001	1768	188	66	37	63	5	16	copy fasta	TJP1	chr15	29695152	29827468
TJP1_chr15_29695152_29827468	0/0	a0002	1768	43	3	12	15	1	12	copy fasta	TJP1	chr15	29695152	29827468
TJP1_chr15_29695152_29827468	0/0	a0003	1768	16	0	2	5	4	5	copy fasta	TJP1	chr15	29695152	29827468
TJP1_chr15_29695152_29827468	0/0	a0004	1768	2	0	0	2	0	0	copy fasta	TJP1	chr15	29695152	29827468
TJP1_chr15_29695152_29827468	0/0	a0005	1768	2	0	0	2	0	0	copy fasta	TJP1	chr15	29695152	29827468
TJP1_chr15_29695152_29827468	0/0	a0006	1768	1	0	0	0	0	1	copy fasta	TJP1	chr15	29695152	29827468
TJP1_chr15_29695152_29827468	0/0	a0007	1768	1	1	0	0	0	0	copy fasta	TJP1	chr15	29695152	29827468
TJP1_chr15_29695152_29827468	0/0	a0008	1768	1	1	0	0	0	0	copy fasta	TJP1	chr15	29695152	29827468
TJP1_chr15_29695152_29827468	0/0	a0009	1768	1	1	0	0	0	0	copy fasta	TJP1	chr15	29695152	29827468
TJP1_chr15_29695152_29827468	0/0	a0010	1768	1	1	0	0	0	0	copy fasta	TJP1	chr15	29695152	29827468
TJP1_chr15_29695152_29827468	0/0	a0011	1768	1	0	0	1	0	0	copy fasta	TJP1	chr15	29695152	29827468
TJP1_chr15_29695152_29827468	0/0	a0012	1768	1	1	0	0	0	0	copy fasta	TJP1	chr15	29695152	29827468
TJP1_chr15_29695152_29827468	0/0	a0013	1768	1	0	0	1	0	0	copy fasta	TJP1	chr15	29695152	29827468
TJP1_chr15_29695152_29827468	0/0	a0014	1768	1	0	0	1	0	0	copy fasta	TJP1	chr15	29695152	29827468
TJP1_chr15_29695152_29827468	0/0	a0015	1768	1	0	1	0	0	0	copy fasta	TJP1	chr15	29695152	29827468
TJP2_chr9_69169277_69260208	0/1	a0001	1190	209	31	37	106	8	26	copy fasta	TJP2	chr9	69169277	69260208
TJP2_chr9_69169277_69260208	1/0	a0002	1190	55	12	11	18	6	7	copy fasta	TJP2	chr9	69169277	69260208
TJP2_chr9_69169277_69260208	0/0	a0003	1190	27	7	2	14	0	4	copy fasta	TJP2	chr9	69169277	69260208
TJP2_chr9_69169277_69260208	0/0	a0004	1190	13	12	0	0	0	1	copy fasta	TJP2	chr9	69169277	69260208
TJP2_chr9_69169277_69260208	0/0	a0005	1190	7	7	0	0	0	0	copy fasta	TJP2	chr9	69169277	69260208
TJP2_chr9_69169277_69260208	0/0	a0006	1190	6	6	0	0	0	0	copy fasta	TJP2	chr9	69169277	69260208
TJP2_chr9_69169277_69260208	0/0	a0007	1190	6	0	2	1	2	1	copy fasta	TJP2	chr9	69169277	69260208
TJP2_chr9_69169277_69260208	0/0	a0008	1190	6	1	3	0	0	2	copy fasta	TJP2	chr9	69169277	69260208
TJP2_chr9_69169277_69260208	0/0	a0009	1190	3	1	1	0	0	1	copy fasta	TJP2	chr9	69169277	69260208
TJP2_chr9_69169277_69260208	0/0	a0010	1190	3	2	1	0	0	0	copy fasta	TJP2	chr9	69169277	69260208
TJP2_chr9_69169277_69260208	0/0	a0011	1190	3	3	0	0	0	0	copy fasta	TJP2	chr9	69169277	69260208
TJP2_chr9_69169277_69260208	0/0	a0012	1190	2	2	0	0	0	0	copy fasta	TJP2	chr9	69169277	69260208
TJP2_chr9_69169277_69260208	0/0	a0013	1190	2	2	0	0	0	0	copy fasta	TJP2	chr9	69169277	69260208
TJP2_chr9_69169277_69260208	0/0	a0014	1190	1	0	0	1	0	0	copy fasta	TJP2	chr9	69169277	69260208
TJP2_chr9_69169277_69260208	0/0	a0015	1190	1	1	0	0	0	0	copy fasta	TJP2	chr9	69169277	69260208
TJP2_chr9_69169277_69260208	0/0	a0016	1190	1	1	0	0	0	0	copy fasta	TJP2	chr9	69169277	69260208
TJP2_chr9_69169277_69260208	0/0	a0017	1190	1	1	0	0	0	0	copy fasta	TJP2	chr9	69169277	69260208
TJP2_chr9_69169277_69260208	0/0	a0018	1190	1	0	0	1	0	0	copy fasta	TJP2	chr9	69169277	69260208
TJP2_chr9_69169277_69260208	0/0	a0019	1190	1	1	0	0	0	0	copy fasta	TJP2	chr9	69169277	69260208
TJP2_chr9_69169277_69260208	0/0	a0020	1190	1	1	0	0	0	0	copy fasta	TJP2	chr9	69169277	69260208
TJP2_chr9_69169277_69260208	0/0	a0021	1190	1	0	0	1	0	0	copy fasta	TJP2	chr9	69169277	69260208
TJP2_chr9_69169277_69260208	0/0	a0022	1190	1	0	0	1	0	0	copy fasta	TJP2	chr9	69169277	69260208
TJP2_chr9_69169277_69260208	0/0	a0023	1190	1	0	1	0	0	0	copy fasta	TJP2	chr9	69169277	69260208
TJP2_chr9_69169277_69260208	0/0	a0024	1190	1	0	0	1	0	0	copy fasta	TJP2	chr9	69169277	69260208
TJP2_chr9_69169277_69260208	0/0	a0025	1190	1	1	0	0	0	0	copy fasta	TJP2	chr9	69169277	69260208
TJP2_chr9_69169277_69260208	0/0	a0026	1190	1	0	0	1	0	0	copy fasta	TJP2	chr9	69169277	69260208