JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TJP2_chr9_69169277_69260208	0/0	a0027	1190	1	0	0	1	0	0	copy fasta	TJP2	chr9	69169277	69260208
TJP3_chr19_3703384_3755813	0/0	a0001	919	119	18	28	52	9	12	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	1/0	a0002	919	117	36	20	46	3	11	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/1	a0003	919	88	5	18	43	5	16	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	a0004	919	24	4	4	11	0	5	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	a0005	919	14	14	0	0	0	0	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	a0006	919	6	0	0	6	0	0	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	a0007	919	5	5	0	0	0	0	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	a0008	919	3	2	1	0	0	0	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	a0009	919	2	0	0	2	0	0	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	a0010	919	2	2	0	0	0	0	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	a0011	919	1	0	0	0	0	1	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	a0012	919	1	1	0	0	0	0	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	a0013	919	1	1	0	0	0	0	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	a0014	919	1	0	0	1	0	0	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	a0015	919	1	0	0	1	0	0	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	a0016	919	1	1	0	0	0	0	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	a0017	919	1	1	0	0	0	0	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	a0018	919	1	0	0	0	0	1	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	a0019	919	1	1	0	0	0	0	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	a0020	919	1	0	0	1	0	0	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	a0021	919	1	0	1	0	0	0	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	a0022	919	1	0	0	0	1	0	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	a0023	919	1	0	1	0	0	0	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	a0024	919	1	0	0	1	0	0	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	a0025	919	1	1	0	0	0	0	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	a0026	919	1	1	0	0	0	0	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	a0027	919	1	0	1	0	0	0	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	a0028	919	1	1	0	0	0	0	copy fasta	TJP3	chr19	3703384	3755813
TK1_chr17_78169091_78192052	1/1	a0001	234	443	93	83	197	18	50	copy fasta	TK1	chr17	78169091	78192052
TK1_chr17_78169091_78192052	0/0	a0002	234	1	0	0	1	0	0	copy fasta	TK1	chr17	78169091	78192052
TK1_chr17_78169091_78192052	0/0	a0003	234	1	1	0	0	0	0	copy fasta	TK1	chr17	78169091	78192052
TK1_chr17_78169091_78192052	0/0	a0004	234	1	0	1	0	0	0	copy fasta	TK1	chr17	78169091	78192052
TK2_chr16_66503003_66555122	1/1	a0001	265	297	83	54	122	6	30	copy fasta	TK2	chr16	66503003	66555122
TK2_chr16_66503003_66555122	0/0	a0002	265	1	0	0	1	0	0	copy fasta	TK2	chr16	66503003	66555122
TK2_chr16_66503003_66555122	0/0	a0003	265	1	1	0	0	0	0	copy fasta	TK2	chr16	66503003	66555122
TK2_chr16_66503003_66555122	0/0	a0004	265	1	0	0	1	0	0	copy fasta	TK2	chr16	66503003	66555122
TKFC_chr11_61328228_61354242	0/1	a0001	575	150	31	31	57	8	22	copy fasta	TKFC	chr11	61328228	61354242
TKFC_chr11_61328228_61354242	1/0	a0002	575	77	57	4	9	0	6	copy fasta	TKFC	chr11	61328228	61354242
TKFC_chr11_61328228_61354242	0/0	a0003	575	7	0	4	0	2	1	copy fasta	TKFC	chr11	61328228	61354242
TKFC_chr11_61328228_61354242	0/0	a0004	575	2	2	0	0	0	0	copy fasta	TKFC	chr11	61328228	61354242
TKFC_chr11_61328228_61354242	0/0	a0005	575	1	0	0	0	0	1	copy fasta	TKFC	chr11	61328228	61354242
TKFC_chr11_61328228_61354242	0/0	a0006	575	1	0	0	1	0	0	copy fasta	TKFC	chr11	61328228	61354242
TKFC_chr11_61328228_61354242	0/0	a0007	575	1	0	1	0	0	0	copy fasta	TKFC	chr11	61328228	61354242
TKFC_chr11_61328228_61354242	0/0	a0008	575	1	1	0	0	0	0	copy fasta	TKFC	chr11	61328228	61354242
TKFC_chr11_61328228_61354242	0/0	a0009	575	1	1	0	0	0	0	copy fasta	TKFC	chr11	61328228	61354242
TKFC_chr11_61328228_61354242	0/0	a0010	575	1	0	0	1	0	0	copy fasta	TKFC	chr11	61328228	61354242
TKTL1_chrX_154290795_154335350	1/1	a0001	596	265	76	53	104	7	23	copy fasta	TKTL1	chrX	154290795	154335350
TKTL1_chrX_154290795_154335350	0/0	a0002	169	1	0	0	1	0	0	copy fasta	TKTL1	chrX	154290795	154335350
TKTL1_chrX_154290795_154335350	0/0	a0003	596	1	0	0	1	0	0	copy fasta	TKTL1	chrX	154290795	154335350