JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TKTL1_chrX_154290795_154335350	0/0	a0004	596	1	0	1	0	0	0	copy fasta	TKTL1	chrX	154290795	154335350
TKTL1_chrX_154290795_154335350	0/0	a0005	366	1	0	0	1	0	0	copy fasta	TKTL1	chrX	154290795	154335350
TKTL1_chrX_154290795_154335350	0/0	a0006	596	1	0	0	1	0	0	copy fasta	TKTL1	chrX	154290795	154335350
TKTL1_chrX_154290795_154335350	0/0	a0007	596	1	0	0	0	0	1	copy fasta	TKTL1	chrX	154290795	154335350
TKTL1_chrX_154290795_154335350	0/0	a0008	50	1	0	0	1	0	0	copy fasta	TKTL1	chrX	154290795	154335350
TKTL2_chr4_163466095_163478754	1/1	a0001	626	330	74	60	151	10	33	copy fasta	TKTL2	chr4	163466095	163478754
TKTL2_chr4_163466095_163478754	0/0	a0002	626	83	13	9	54	4	3	copy fasta	TKTL2	chr4	163466095	163478754
TKTL2_chr4_163466095_163478754	0/0	a0003	626	5	5	0	0	0	0	copy fasta	TKTL2	chr4	163466095	163478754
TKTL2_chr4_163466095_163478754	0/0	a0004	626	3	0	0	3	0	0	copy fasta	TKTL2	chr4	163466095	163478754
TKTL2_chr4_163466095_163478754	0/0	a0005	626	2	0	0	0	0	2	copy fasta	TKTL2	chr4	163466095	163478754
TKTL2_chr4_163466095_163478754	0/0	a0006	626	2	0	0	0	0	2	copy fasta	TKTL2	chr4	163466095	163478754
TKTL2_chr4_163466095_163478754	0/0	a0007	626	1	0	0	1	0	0	copy fasta	TKTL2	chr4	163466095	163478754
TKTL2_chr4_163466095_163478754	0/0	a0008	626	1	0	0	1	0	0	copy fasta	TKTL2	chr4	163466095	163478754
TKTL2_chr4_163466095_163478754	0/0	a0009	626	1	0	0	0	0	1	copy fasta	TKTL2	chr4	163466095	163478754
TKTL2_chr4_163466095_163478754	0/0	a0010	626	1	0	0	0	0	1	copy fasta	TKTL2	chr4	163466095	163478754
TKTL2_chr4_163466095_163478754	0/0	a0011	626	1	1	0	0	0	0	copy fasta	TKTL2	chr4	163466095	163478754
TKTL2_chr4_163466095_163478754	0/0	a0012	626	1	1	0	0	0	0	copy fasta	TKTL2	chr4	163466095	163478754
TKTL2_chr4_163466095_163478754	0/0	a0013	626	1	1	0	0	0	0	copy fasta	TKTL2	chr4	163466095	163478754
TKTL2_chr4_163466095_163478754	0/0	a0014	626	1	0	1	0	0	0	copy fasta	TKTL2	chr4	163466095	163478754
TKTL2_chr4_163466095_163478754	0/0	a0015	626	1	1	0	0	0	0	copy fasta	TKTL2	chr4	163466095	163478754
TKTL2_chr4_163466095_163478754	0/0	a0016	626	1	0	0	1	0	0	copy fasta	TKTL2	chr4	163466095	163478754
TKTL2_chr4_163466095_163478754	0/0	a0017	626	1	0	0	1	0	0	copy fasta	TKTL2	chr4	163466095	163478754
TKT_chr3_53219712_53261022	1/1	a0001	623	361	84	68	148	16	43	copy fasta	TKT	chr3	53219712	53261022
TKT_chr3_53219712_53261022	0/0	a0002	623	4	0	4	0	0	0	copy fasta	TKT	chr3	53219712	53261022
TKT_chr3_53219712_53261022	0/0	a0003	623	3	0	0	3	0	0	copy fasta	TKT	chr3	53219712	53261022
TKT_chr3_53219712_53261022	0/0	a0004	623	2	0	0	2	0	0	copy fasta	TKT	chr3	53219712	53261022
TKT_chr3_53219712_53261022	0/0	a0005	623	1	0	0	1	0	0	copy fasta	TKT	chr3	53219712	53261022
TKT_chr3_53219712_53261022	0/0	a0006	623	1	1	0	0	0	0	copy fasta	TKT	chr3	53219712	53261022
TKT_chr3_53219712_53261022	0/0	a0007	623	1	1	0	0	0	0	copy fasta	TKT	chr3	53219712	53261022
TKT_chr3_53219712_53261022	0/0	a0008	623	1	0	0	1	0	0	copy fasta	TKT	chr3	53219712	53261022
TKT_chr3_53219712_53261022	0/0	a0009	623	1	0	0	0	0	1	copy fasta	TKT	chr3	53219712	53261022
TKT_chr3_53219712_53261022	0/0	a0010	623	1	0	1	0	0	0	copy fasta	TKT	chr3	53219712	53261022
TKT_chr3_53219712_53261022	0/0	a0011	623	1	0	1	0	0	0	copy fasta	TKT	chr3	53219712	53261022
TKT_chr3_53219712_53261022	0/0	a0012	623	1	0	0	1	0	0	copy fasta	TKT	chr3	53219712	53261022
TLCD1_chr17_28719348_28731233	1/1	a0001	247	353	85	70	139	12	45	copy fasta	TLCD1	chr17	28719348	28731233
TLCD1_chr17_28719348_28731233	0/0	a0002	247	1	1	0	0	0	0	copy fasta	TLCD1	chr17	28719348	28731233
TLCD1_chr17_28719348_28731233	0/0	a0003	247	1	0	0	0	0	1	copy fasta	TLCD1	chr17	28719348	28731233
TLCD1_chr17_28719348_28731233	0/0	a0004	247	1	0	0	1	0	0	copy fasta	TLCD1	chr17	28719348	28731233
TLCD2_chr17_1697816_1715377	0/1	a0001	264	430	75	77	213	18	46	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	a0002	264	8	8	0	0	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	a0003	264	7	7	0	0	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	a0004	264	1	1	0	0	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	a0005	264	1	0	1	0	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	a0006	264	1	0	0	0	0	1	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	a0007	264	1	0	0	0	0	1	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	a0008	264	1	1	0	0	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	a0009	264	1	0	0	1	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD3A_chr17_727596_747968	1/1	a0001	257	391	64	74	185	18	48	copy fasta	TLCD3A	chr17	727596	747968
TLCD3A_chr17_727596_747968	0/0	a0002	257	2	2	0	0	0	0	copy fasta	TLCD3A	chr17	727596	747968
TLCD3A_chr17_727596_747968	0/0	a0003	257	1	0	0	1	0	0	copy fasta	TLCD3A	chr17	727596	747968