JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TLCD3A_chr17_727596_747968	0/0	a0004	257	1	0	0	1	0	0	copy fasta	TLCD3A	chr17	727596	747968
TLCD3A_chr17_727596_747968	0/0	a0005	257	1	0	0	1	0	0	copy fasta	TLCD3A	chr17	727596	747968
TLCD3B_chr16_30019427_30036271	1/1	a0001	274	348	79	72	149	12	34	copy fasta	TLCD3B	chr16	30019427	30036271
TLCD3B_chr16_30019427_30036271	0/0	a0002	274	1	0	0	1	0	0	copy fasta	TLCD3B	chr16	30019427	30036271
TLCD3B_chr16_30019427_30036271	0/0	a0003	274	1	1	0	0	0	0	copy fasta	TLCD3B	chr16	30019427	30036271
TLCD4_chr1_95112355_95202607	1/1	a0001	263	377	89	76	170	8	32	copy fasta	TLCD4	chr1	95112355	95202607
TLCD4_chr1_95112355_95202607	0/0	a0002	263	1	1	0	0	0	0	copy fasta	TLCD4	chr1	95112355	95202607
TLCD5_chr11_120320299_120338686	1/1	a0001	245	431	96	83	186	18	46	copy fasta	TLCD5	chr11	120320299	120338686
TLCD5_chr11_120320299_120338686	0/0	a0002	245	1	0	1	0	0	0	copy fasta	TLCD5	chr11	120320299	120338686
TLDC2_chr20_36871138_36899235	1/1	a0001	215	359	91	66	144	16	40	copy fasta	TLDC2	chr20	36871138	36899235
TLDC2_chr20_36871138_36899235	0/0	a0002	215	12	0	6	6	0	0	copy fasta	TLDC2	chr20	36871138	36899235
TLDC2_chr20_36871138_36899235	0/0	a0003	215	3	0	0	3	0	0	copy fasta	TLDC2	chr20	36871138	36899235
TLDC2_chr20_36871138_36899235	0/0	a0004	215	3	0	0	3	0	0	copy fasta	TLDC2	chr20	36871138	36899235
TLDC2_chr20_36871138_36899235	0/0	a0005	215	3	0	0	0	0	3	copy fasta	TLDC2	chr20	36871138	36899235
TLDC2_chr20_36871138_36899235	0/0	a0006	215	1	1	0	0	0	0	copy fasta	TLDC2	chr20	36871138	36899235
TLDC2_chr20_36871138_36899235	0/0	a0007	215	1	0	0	0	0	1	copy fasta	TLDC2	chr20	36871138	36899235
TLDC2_chr20_36871138_36899235	0/0	a0008	215	1	1	0	0	0	0	copy fasta	TLDC2	chr20	36871138	36899235
TLDC2_chr20_36871138_36899235	0/0	a0009	215	1	1	0	0	0	0	copy fasta	TLDC2	chr20	36871138	36899235
TLE1_chr9_81578683_81694547	1/1	a0001	770	356	94	60	146	16	38	copy fasta	TLE1	chr9	81578683	81694547
TLE2_chr19_2992644_3034280	1/1	a0001	743	387	89	79	159	17	41	copy fasta	TLE2	chr19	2992644	3034280
TLE2_chr19_2992644_3034280	0/0	a0002	743	9	0	2	7	0	0	copy fasta	TLE2	chr19	2992644	3034280
TLE2_chr19_2992644_3034280	0/0	a0003	743	1	1	0	0	0	0	copy fasta	TLE2	chr19	2992644	3034280
TLE2_chr19_2992644_3034280	0/0	a0004	743	1	1	0	0	0	0	copy fasta	TLE2	chr19	2992644	3034280
TLE2_chr19_2992644_3034280	0/0	a0005	743	1	0	0	1	0	0	copy fasta	TLE2	chr19	2992644	3034280
TLE2_chr19_2992644_3034280	0/0	a0006	743	1	0	0	1	0	0	copy fasta	TLE2	chr19	2992644	3034280
TLE2_chr19_2992644_3034280	0/0	a0007	743	1	0	0	0	1	0	copy fasta	TLE2	chr19	2992644	3034280
TLE2_chr19_2992644_3034280	0/0	a0008	743	1	1	0	0	0	0	copy fasta	TLE2	chr19	2992644	3034280
TLE2_chr19_2992644_3034280	0/0	a0009	743	1	0	1	0	0	0	copy fasta	TLE2	chr19	2992644	3034280
TLE2_chr19_2992644_3034280	0/0	a0010	743	1	0	0	0	0	1	copy fasta	TLE2	chr19	2992644	3034280
TLE3_chr15_70042790_70102917	1/1	a0001	769	383	92	64	163	18	44	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	a0002	769	1	0	0	1	0	0	copy fasta	TLE3	chr15	70042790	70102917
TLE4_chr9_79566965_79731882	1/1	a0001	773	255	78	50	93	10	22	copy fasta	TLE4	chr9	79566965	79731882
TLE4_chr9_79566965_79731882	0/0	a0002	773	1	1	0	0	0	0	copy fasta	TLE4	chr9	79566965	79731882
TLE4_chr9_79566965_79731882	0/0	a0003	773	1	1	0	0	0	0	copy fasta	TLE4	chr9	79566965	79731882
TLE4_chr9_79566965_79731882	0/0	a0004	773	1	0	0	1	0	0	copy fasta	TLE4	chr9	79566965	79731882
TLE5_chr19_3047910_3067495	1/1	a0001	197	410	96	78	168	18	48	copy fasta	TLE5	chr19	3047910	3067495
TLE6_chr19_2972564_3000179	1/1	a0001	572	408	97	80	169	16	44	copy fasta	TLE6	chr19	2972564	3000179
TLE6_chr19_2972564_3000179	0/0	a0002	572	1	0	0	1	0	0	copy fasta	TLE6	chr19	2972564	3000179
TLE6_chr19_2972564_3000179	0/0	a0003	572	1	1	0	0	0	0	copy fasta	TLE6	chr19	2972564	3000179
TLE7_chr16_71424980_71447054	1/1	a0001	441	411	93	80	180	16	40	copy fasta	TLE7	chr16	71424980	71447054
TLE7_chr16_71424980_71447054	0/0	a0002	441	1	1	0	0	0	0	copy fasta	TLE7	chr16	71424980	71447054
TLK1_chr2_170985823_171165893	1/1	a0001	766	265	93	50	96	8	16	copy fasta	TLK1	chr2	170985823	171165893
TLK1_chr2_170985823_171165893	0/0	a0002	766	1	1	0	0	0	0	copy fasta	TLK1	chr2	170985823	171165893
TLK2_chr17_62473825_62620481	1/1	a0001	750	292	80	66	100	12	32	copy fasta	TLK2	chr17	62473825	62620481
TLL1_chr4_165868237_166109457	1/1	a0001	1013	170	54	34	54	5	21	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	a0002	1013	55	9	2	38	3	3	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	a0003	1013	17	17	0	0	0	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	a0004	1013	4	4	0	0	0	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	a0005	1013	1	0	0	1	0	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	a0006	1013	1	0	0	1	0	0	copy fasta	TLL1	chr4	165868237	166109457