JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TLL1_chr4_165868237_166109457	0/0	a0007	1013	1	0	0	1	0	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	a0008	1013	1	0	0	1	0	0	copy fasta	TLL1	chr4	165868237	166109457
TLL2_chr10_96359608_96518926	1/1	a0001	1015	233	58	50	82	7	34	copy fasta	TLL2	chr10	96359608	96518926
TLL2_chr10_96359608_96518926	0/0	a0002	1015	8	8	0	0	0	0	copy fasta	TLL2	chr10	96359608	96518926
TLL2_chr10_96359608_96518926	0/0	a0003	1015	4	4	0	0	0	0	copy fasta	TLL2	chr10	96359608	96518926
TLL2_chr10_96359608_96518926	0/0	a0004	1015	2	0	2	0	0	0	copy fasta	TLL2	chr10	96359608	96518926
TLL2_chr10_96359608_96518926	0/0	a0005	1015	1	1	0	0	0	0	copy fasta	TLL2	chr10	96359608	96518926
TLL2_chr10_96359608_96518926	0/0	a0006	1015	1	0	0	0	0	1	copy fasta	TLL2	chr10	96359608	96518926
TLL2_chr10_96359608_96518926	0/0	a0007	1015	1	1	0	0	0	0	copy fasta	TLL2	chr10	96359608	96518926
TLL2_chr10_96359608_96518926	0/0	a0008	1015	1	0	0	0	0	1	copy fasta	TLL2	chr10	96359608	96518926
TLL2_chr10_96359608_96518926	0/0	a0009	1015	1	0	0	0	1	0	copy fasta	TLL2	chr10	96359608	96518926
TLL2_chr10_96359608_96518926	0/0	a0010	1015	1	1	0	0	0	0	copy fasta	TLL2	chr10	96359608	96518926
TLL2_chr10_96359608_96518926	0/0	a0011	1015	1	1	0	0	0	0	copy fasta	TLL2	chr10	96359608	96518926
TLL2_chr10_96359608_96518926	0/0	a0012	1015	1	0	0	0	0	1	copy fasta	TLL2	chr10	96359608	96518926
TLL2_chr10_96359608_96518926	0/0	a0013	1015	1	0	0	0	0	1	copy fasta	TLL2	chr10	96359608	96518926
TLN1_chr9_35691948_35737195	1/1	a0001	2541	272	86	46	103	8	27	copy fasta	TLN1	chr9	35691948	35737195
TLN1_chr9_35691948_35737195	0/0	a0002	2541	92	1	24	54	4	9	copy fasta	TLN1	chr9	35691948	35737195
TLN1_chr9_35691948_35737195	0/0	a0003	2541	2	2	0	0	0	0	copy fasta	TLN1	chr9	35691948	35737195
TLN1_chr9_35691948_35737195	0/0	a0004	2541	1	0	0	1	0	0	copy fasta	TLN1	chr9	35691948	35737195
TLN1_chr9_35691948_35737195	0/0	a0005	2541	1	0	0	1	0	0	copy fasta	TLN1	chr9	35691948	35737195
TLN1_chr9_35691948_35737195	0/0	a0006	2541	1	1	0	0	0	0	copy fasta	TLN1	chr9	35691948	35737195
TLN1_chr9_35691948_35737195	0/0	a0007	2541	1	0	0	1	0	0	copy fasta	TLN1	chr9	35691948	35737195
TLN1_chr9_35691948_35737195	0/0	a0008	2541	1	0	0	0	0	1	copy fasta	TLN1	chr9	35691948	35737195
TLN1_chr9_35691948_35737195	0/0	a0009	2541	1	0	0	0	0	1	copy fasta	TLN1	chr9	35691948	35737195
TLN2_chr15_62385550_62849631	1/1	a0001	2542	100	44	20	16	4	14	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	a0002	2542	31	16	6	2	3	4	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	a0003	2542	3	2	0	0	0	1	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	a0004	2542	1	0	0	0	1	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	a0005	2542	1	0	1	0	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	a0006	2542	1	1	0	0	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	a0007	2542	1	0	0	1	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	a0008	2542	1	0	0	1	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	a0009	2542	1	0	0	1	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	a0010	2542	1	1	0	0	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	a0011	2542	1	0	0	0	0	1	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	a0012	2542	1	0	1	0	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	a0013	2542	1	0	0	1	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLNRD1_chr15_80995923_81010788	1/1	a0001	362	352	91	68	139	12	40	copy fasta	TLNRD1	chr15	80995923	81010788
TLNRD1_chr15_80995923_81010788	0/0	a0002	362	5	5	0	0	0	0	copy fasta	TLNRD1	chr15	80995923	81010788
TLNRD1_chr15_80995923_81010788	0/0	a0003	362	1	0	0	1	0	0	copy fasta	TLNRD1	chr15	80995923	81010788
TLR10_chr4_38767238_38787990	1/0	a0001	811	150	40	49	37	7	16	copy fasta	TLR10	chr4	38767238	38787990
TLR10_chr4_38767238_38787990	0/0	a0002	811	80	0	9	66	1	4	copy fasta	TLR10	chr4	38767238	38787990
TLR10_chr4_38767238_38787990	0/0	a0003	811	76	34	1	27	2	12	copy fasta	TLR10	chr4	38767238	38787990
TLR10_chr4_38767238_38787990	0/0	a0004	811	55	4	13	31	0	7	copy fasta	TLR10	chr4	38767238	38787990
TLR10_chr4_38767238_38787990	0/0	a0005	811	39	1	1	34	1	2	copy fasta	TLR10	chr4	38767238	38787990
TLR10_chr4_38767238_38787990	0/0	a0006	811	15	6	1	4	1	3	copy fasta	TLR10	chr4	38767238	38787990
TLR10_chr4_38767238_38787990	0/0	a0007	811	5	0	4	0	0	1	copy fasta	TLR10	chr4	38767238	38787990
TLR10_chr4_38767238_38787990	0/0	a0008	811	3	0	0	0	0	3	copy fasta	TLR10	chr4	38767238	38787990
TLR10_chr4_38767238_38787990	0/0	a0009	811	3	0	0	3	0	0	copy fasta	TLR10	chr4	38767238	38787990
TLR10_chr4_38767238_38787990	0/0	a0010	369	2	2	0	0	0	0	copy fasta	TLR10	chr4	38767238	38787990