JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TLR10_chr4_38767238_38787990	0/0	a0011	811	2	2	0	0	0	0	copy fasta	TLR10	chr4	38767238	38787990
TLR10_chr4_38767238_38787990	0/0	a0012	811	2	2	0	0	0	0	copy fasta	TLR10	chr4	38767238	38787990
TLR10_chr4_38767238_38787990	0/0	a0013	811	2	1	1	0	0	0	copy fasta	TLR10	chr4	38767238	38787990
TLR10_chr4_38767238_38787990	0/0	a0014	771	1	0	1	0	0	0	copy fasta	TLR10	chr4	38767238	38787990
TLR10_chr4_38767238_38787990	0/0	a0015	811	1	0	0	1	0	0	copy fasta	TLR10	chr4	38767238	38787990
TLR10_chr4_38767238_38787990	0/1	a0016	811	1	0	0	0	0	0	copy fasta	TLR10	chr4	38767238	38787990
TLR10_chr4_38767238_38787990	0/0	a0017	811	1	0	0	1	0	0	copy fasta	TLR10	chr4	38767238	38787990
TLR1_chr4_38791255_38809791	0/1	a0001	786	206	36	26	116	1	26	copy fasta	TLR1	chr4	38791255	38809791
TLR1_chr4_38791255_38809791	0/0	a0002	786	103	12	16	60	2	13	copy fasta	TLR1	chr4	38791255	38809791
TLR1_chr4_38791255_38809791	1/0	a0003	786	48	5	29	1	8	4	copy fasta	TLR1	chr4	38791255	38809791
TLR1_chr4_38791255_38809791	0/0	a0004	786	17	0	0	17	0	0	copy fasta	TLR1	chr4	38791255	38809791
TLR1_chr4_38791255_38809791	0/0	a0005	786	13	9	1	1	0	2	copy fasta	TLR1	chr4	38791255	38809791
TLR1_chr4_38791255_38809791	0/0	a0006	786	11	11	0	0	0	0	copy fasta	TLR1	chr4	38791255	38809791
TLR1_chr4_38791255_38809791	0/0	a0007	786	11	9	1	0	1	0	copy fasta	TLR1	chr4	38791255	38809791
TLR1_chr4_38791255_38809791	0/0	a0008	786	8	0	0	8	0	0	copy fasta	TLR1	chr4	38791255	38809791
TLR1_chr4_38791255_38809791	0/0	a0009	786	5	0	0	5	0	0	copy fasta	TLR1	chr4	38791255	38809791
TLR1_chr4_38791255_38809791	0/0	a0010	786	3	3	0	0	0	0	copy fasta	TLR1	chr4	38791255	38809791
TLR1_chr4_38791255_38809791	0/0	a0011	786	3	3	0	0	0	0	copy fasta	TLR1	chr4	38791255	38809791
TLR1_chr4_38791255_38809791	0/0	a0012	786	2	0	0	0	2	0	copy fasta	TLR1	chr4	38791255	38809791
TLR1_chr4_38791255_38809791	0/0	a0013	215	1	0	0	1	0	0	copy fasta	TLR1	chr4	38791255	38809791
TLR1_chr4_38791255_38809791	0/0	a0014	786	1	0	1	0	0	0	copy fasta	TLR1	chr4	38791255	38809791
TLR1_chr4_38791255_38809791	0/0	a0015	786	1	0	0	0	0	1	copy fasta	TLR1	chr4	38791255	38809791
TLR1_chr4_38791255_38809791	0/0	a0016	786	1	0	0	1	0	0	copy fasta	TLR1	chr4	38791255	38809791
TLR1_chr4_38791255_38809791	0/0	a0017	786	1	0	0	1	0	0	copy fasta	TLR1	chr4	38791255	38809791
TLR1_chr4_38791255_38809791	0/0	a0018	786	1	0	0	1	0	0	copy fasta	TLR1	chr4	38791255	38809791
TLR1_chr4_38791255_38809791	0/0	a0019	786	1	0	0	0	0	1	copy fasta	TLR1	chr4	38791255	38809791
TLR1_chr4_38791255_38809791	0/0	a0020	786	1	0	1	0	0	0	copy fasta	TLR1	chr4	38791255	38809791
TLR1_chr4_38791255_38809791	0/0	a0021	786	1	0	1	0	0	0	copy fasta	TLR1	chr4	38791255	38809791
TLR1_chr4_38791255_38809791	0/0	a0022	786	1	0	0	0	0	1	copy fasta	TLR1	chr4	38791255	38809791
TLR1_chr4_38791255_38809791	0/0	a0023	786	1	1	0	0	0	0	copy fasta	TLR1	chr4	38791255	38809791
TLR1_chr4_38791255_38809791	0/0	a0024	786	1	1	0	0	0	0	copy fasta	TLR1	chr4	38791255	38809791
TLR1_chr4_38791255_38809791	0/0	a0025	786	1	0	1	0	0	0	copy fasta	TLR1	chr4	38791255	38809791
TLR1_chr4_38791255_38809791	0/0	a0026	786	1	1	0	0	0	0	copy fasta	TLR1	chr4	38791255	38809791
TLR1_chr4_38791255_38809791	0/0	a0027	786	1	1	0	0	0	0	copy fasta	TLR1	chr4	38791255	38809791
TLR1_chr4_38791255_38809791	0/0	a0028	786	1	0	1	0	0	0	copy fasta	TLR1	chr4	38791255	38809791
TLR2_chr4_153679280_153711260	1/1	a0001	784	417	93	64	204	16	38	copy fasta	TLR2	chr4	153679280	153711260
TLR2_chr4_153679280_153711260	0/0	a0002	784	4	0	4	0	0	0	copy fasta	TLR2	chr4	153679280	153711260
TLR2_chr4_153679280_153711260	0/0	a0003	784	2	0	2	0	0	0	copy fasta	TLR2	chr4	153679280	153711260
TLR2_chr4_153679280_153711260	0/0	a0004	784	2	2	0	0	0	0	copy fasta	TLR2	chr4	153679280	153711260
TLR2_chr4_153679280_153711260	0/0	a0005	784	1	1	0	0	0	0	copy fasta	TLR2	chr4	153679280	153711260
TLR2_chr4_153679280_153711260	0/0	a0006	784	1	1	0	0	0	0	copy fasta	TLR2	chr4	153679280	153711260
TLR2_chr4_153679280_153711260	0/0	a0007	784	1	0	1	0	0	0	copy fasta	TLR2	chr4	153679280	153711260
TLR2_chr4_153679280_153711260	0/0	a0008	784	1	0	0	1	0	0	copy fasta	TLR2	chr4	153679280	153711260
TLR2_chr4_153679280_153711260	0/0	a0009	784	1	0	0	1	0	0	copy fasta	TLR2	chr4	153679280	153711260
TLR2_chr4_153679280_153711260	0/0	a0010	784	1	1	0	0	0	0	copy fasta	TLR2	chr4	153679280	153711260
TLR2_chr4_153679280_153711260	0/0	a0011	784	1	0	1	0	0	0	copy fasta	TLR2	chr4	153679280	153711260
TLR3_chr4_186064156_186093073	1/1	a0001	904	325	72	55	145	9	42	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	a0002	904	94	5	18	60	7	4	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	a0003	904	10	9	1	0	0	0	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	a0004	904	6	6	0	0	0	0	copy fasta	TLR3	chr4	186064156	186093073