JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
BICD2_chr9_92706363_92769833	0/0	a0009	855	1	0	0	0	0	1	copy fasta	BICD2	chr9	92706363	92769833
BICDL1_chr12_119984236_120099494	1/1	a0001	621	294	90	40	136	6	20	copy fasta	BICDL1	chr12	119984236	120099494
BICDL1_chr12_119984236_120099494	0/0	a0002	621	2	0	0	0	0	2	copy fasta	BICDL1	chr12	119984236	120099494
BICDL2_chr16_3022682_3041944	1/1	a0001	508	195	56	26	88	5	18	copy fasta	BICDL2	chr16	3022682	3041944
BICDL2_chr16_3022682_3041944	0/0	a0002	508	100	22	16	45	7	10	copy fasta	BICDL2	chr16	3022682	3041944
BICDL2_chr16_3022682_3041944	0/0	a0003	508	59	4	14	27	2	12	copy fasta	BICDL2	chr16	3022682	3041944
BICDL2_chr16_3022682_3041944	0/0	a0004	508	16	0	9	5	0	2	copy fasta	BICDL2	chr16	3022682	3041944
BICDL2_chr16_3022682_3041944	0/0	a0005	508	7	3	3	0	0	1	copy fasta	BICDL2	chr16	3022682	3041944
BICDL2_chr16_3022682_3041944	0/0	a0006	508	3	2	0	0	0	1	copy fasta	BICDL2	chr16	3022682	3041944
BICDL2_chr16_3022682_3041944	0/0	a0007	508	2	2	0	0	0	0	copy fasta	BICDL2	chr16	3022682	3041944
BICDL2_chr16_3022682_3041944	0/0	a0008	508	2	0	0	0	2	0	copy fasta	BICDL2	chr16	3022682	3041944
BICDL2_chr16_3022682_3041944	0/0	a0009	508	1	1	0	0	0	0	copy fasta	BICDL2	chr16	3022682	3041944
BICDL2_chr16_3022682_3041944	0/0	a0010	508	1	0	0	1	0	0	copy fasta	BICDL2	chr16	3022682	3041944
BICDL2_chr16_3022682_3041944	0/0	a0011	508	1	1	0	0	0	0	copy fasta	BICDL2	chr16	3022682	3041944
BICDL2_chr16_3022682_3041944	0/0	a0012	508	1	1	0	0	0	0	copy fasta	BICDL2	chr16	3022682	3041944
BICDL2_chr16_3022682_3041944	0/0	a0013	508	1	1	0	0	0	0	copy fasta	BICDL2	chr16	3022682	3041944
BICDL2_chr16_3022682_3041944	0/0	a0014	508	1	1	0	0	0	0	copy fasta	BICDL2	chr16	3022682	3041944
BICRAL_chr6_42777052_42873556	1/1	a0001	1079	263	74	46	111	10	20	copy fasta	BICRAL	chr6	42777052	42873556
BICRAL_chr6_42777052_42873556	0/0	a0002	1079	3	3	0	0	0	0	copy fasta	BICRAL	chr6	42777052	42873556
BICRAL_chr6_42777052_42873556	0/0	a0003	1079	2	0	0	2	0	0	copy fasta	BICRAL	chr6	42777052	42873556
BICRAL_chr6_42777052_42873556	0/0	a0004	1079	1	1	0	0	0	0	copy fasta	BICRAL	chr6	42777052	42873556
BICRAL_chr6_42777052_42873556	0/0	a0005	1079	1	0	0	1	0	0	copy fasta	BICRAL	chr6	42777052	42873556
BICRA_chr19_47604134_47708277	1/1	a0001	1560	203	53	44	71	8	25	copy fasta	BICRA	chr19	47604134	47708277
BICRA_chr19_47604134_47708277	0/0	a0002	1560	74	17	13	30	4	10	copy fasta	BICRA	chr19	47604134	47708277
BICRA_chr19_47604134_47708277	0/0	a0003	1560	23	19	4	0	0	0	copy fasta	BICRA	chr19	47604134	47708277
BICRA_chr19_47604134_47708277	0/0	a0004	1560	2	2	0	0	0	0	copy fasta	BICRA	chr19	47604134	47708277
BICRA_chr19_47604134_47708277	0/0	a0005	1560	1	0	0	1	0	0	copy fasta	BICRA	chr19	47604134	47708277
BICRA_chr19_47604134_47708277	0/0	a0006	1560	1	1	0	0	0	0	copy fasta	BICRA	chr19	47604134	47708277
BICRA_chr19_47604134_47708277	0/0	a0007	1560	1	0	1	0	0	0	copy fasta	BICRA	chr19	47604134	47708277
BICRA_chr19_47604134_47708277	0/0	a0008	1560	1	0	1	0	0	0	copy fasta	BICRA	chr19	47604134	47708277
BICRA_chr19_47604134_47708277	0/0	a0009	1560	1	0	1	0	0	0	copy fasta	BICRA	chr19	47604134	47708277
BICRA_chr19_47604134_47708277	0/0	a0010	1560	1	0	0	0	0	1	copy fasta	BICRA	chr19	47604134	47708277
BICRA_chr19_47604134_47708277	0/0	a0011	1560	1	0	0	0	0	1	copy fasta	BICRA	chr19	47604134	47708277
BICRA_chr19_47604134_47708277	0/0	a0012	1564	1	0	0	0	0	1	copy fasta	BICRA	chr19	47604134	47708277
BICRA_chr19_47604134_47708277	0/0	a0013	1560	1	1	0	0	0	0	copy fasta	BICRA	chr19	47604134	47708277
BICRA_chr19_47604134_47708277	0/0	a0014	1560	1	1	0	0	0	0	copy fasta	BICRA	chr19	47604134	47708277
BID_chr22_17729138_17779469	1/1	a0001	195	324	78	64	124	16	40	copy fasta	BID	chr22	17729138	17779469
BID_chr22_17729138_17779469	0/0	a0002	195	33	11	4	16	0	2	copy fasta	BID	chr22	17729138	17779469
BID_chr22_17729138_17779469	0/0	a0003	195	4	4	0	0	0	0	copy fasta	BID	chr22	17729138	17779469
BID_chr22_17729138_17779469	0/0	a0004	195	1	1	0	0	0	0	copy fasta	BID	chr22	17729138	17779469
BIK_chr22_43105750_43134712	1/1	a0001	160	380	87	78	151	16	46	copy fasta	BIK	chr22	43105750	43134712
BIK_chr22_43105750_43134712	0/0	a0002	160	3	0	3	0	0	0	copy fasta	BIK	chr22	43105750	43134712
BIK_chr22_43105750_43134712	0/0	a0003	150	1	0	1	0	0	0	copy fasta	BIK	chr22	43105750	43134712
BIK_chr22_43105750_43134712	0/0	a0004	160	1	0	0	1	0	0	copy fasta	BIK	chr22	43105750	43134712
BIK_chr22_43105750_43134712	0/0	a0005	160	1	1	0	0	0	0	copy fasta	BIK	chr22	43105750	43134712
BIN1_chr2_127043032_127112154	1/1	a0001	593	324	78	61	136	10	37	copy fasta	BIN1	chr2	127043032	127112154
BIN1_chr2_127043032_127112154	0/0	a0002	593	15	14	1	0	0	0	copy fasta	BIN1	chr2	127043032	127112154
BIN1_chr2_127043032_127112154	0/0	a0003	593	2	0	0	2	0	0	copy fasta	BIN1	chr2	127043032	127112154
BIN1_chr2_127043032_127112154	0/0	a0004	593	1	1	0	0	0	0	copy fasta	BIN1	chr2	127043032	127112154
BIN1_chr2_127043032_127112154	0/0	a0005	593	1	1	0	0	0	0	copy fasta	BIN1	chr2	127043032	127112154