JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TLR3_chr4_186064156_186093073	0/0	a0005	904	3	0	0	3	0	0	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	a0006	904	2	2	0	0	0	0	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	a0007	904	2	2	0	0	0	0	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	a0008	904	2	0	0	2	0	0	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	a0009	904	1	0	0	0	1	0	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	a0010	904	1	0	0	0	1	0	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	a0011	904	1	0	0	1	0	0	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	a0012	904	1	0	0	1	0	0	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	a0013	904	1	1	0	0	0	0	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	a0014	904	1	1	0	0	0	0	copy fasta	TLR3	chr4	186064156	186093073
TLR4_chr9_117699403_117729735	1/1	a0001	839	359	87	72	151	14	33	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	a0002	839	10	1	4	0	1	4	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	a0003	839	6	3	0	0	0	3	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	a0004	839	4	4	0	0	0	0	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	a0005	839	3	2	1	0	0	0	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	a0006	839	2	0	0	2	0	0	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	a0007	839	1	0	0	1	0	0	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	a0008	839	1	0	0	1	0	0	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	a0009	839	1	1	0	0	0	0	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	a0010	839	1	0	1	0	0	0	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	a0011	793	1	0	0	0	0	1	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	a0012	839	1	0	0	0	0	1	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	a0013	839	1	1	0	0	0	0	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	a0014	839	1	0	0	0	1	0	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	a0015	839	1	1	0	0	0	0	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	a0016	839	1	0	0	1	0	0	copy fasta	TLR4	chr9	117699403	117729735
TLR5_chr1_223104404_223148248	1/1	a0001	858	192	66	42	60	8	14	copy fasta	TLR5	chr1	223104404	223148248
TLR5_chr1_223104404_223148248	0/0	a0002	858	79	4	18	36	3	18	copy fasta	TLR5	chr1	223104404	223148248
TLR5_chr1_223104404_223148248	0/0	a0003	858	60	0	10	40	4	6	copy fasta	TLR5	chr1	223104404	223148248
TLR5_chr1_223104404_223148248	0/0	a0004	391	12	4	1	3	1	3	copy fasta	TLR5	chr1	223104404	223148248
TLR5_chr1_223104404_223148248	0/0	a0005	858	8	8	0	0	0	0	copy fasta	TLR5	chr1	223104404	223148248
TLR5_chr1_223104404_223148248	0/0	a0006	858	4	0	0	4	0	0	copy fasta	TLR5	chr1	223104404	223148248
TLR5_chr1_223104404_223148248	0/0	a0007	305	3	0	0	3	0	0	copy fasta	TLR5	chr1	223104404	223148248
TLR5_chr1_223104404_223148248	0/0	a0008	858	2	0	0	2	0	0	copy fasta	TLR5	chr1	223104404	223148248
TLR5_chr1_223104404_223148248	0/0	a0009	858	2	2	0	0	0	0	copy fasta	TLR5	chr1	223104404	223148248
TLR5_chr1_223104404_223148248	0/0	a0010	858	1	0	0	0	0	1	copy fasta	TLR5	chr1	223104404	223148248
TLR5_chr1_223104404_223148248	0/0	a0011	858	1	1	0	0	0	0	copy fasta	TLR5	chr1	223104404	223148248
TLR5_chr1_223104404_223148248	0/0	a0012	858	1	0	1	0	0	0	copy fasta	TLR5	chr1	223104404	223148248
TLR5_chr1_223104404_223148248	0/0	a0013	858	1	0	0	1	0	0	copy fasta	TLR5	chr1	223104404	223148248
TLR5_chr1_223104404_223148248	0/0	a0014	858	1	0	0	1	0	0	copy fasta	TLR5	chr1	223104404	223148248
TLR5_chr1_223104404_223148248	0/0	a0015	386	1	1	0	0	0	0	copy fasta	TLR5	chr1	223104404	223148248
TLR6_chr4_38817897_38861817	0/1	a0001	796	306	53	49	156	7	40	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	1/0	a0002	796	23	2	14	0	5	1	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	a0003	796	21	5	0	15	0	1	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	a0004	796	13	0	0	13	0	0	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	a0005	796	12	11	1	0	0	0	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	a0006	796	10	1	7	1	0	1	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	a0007	796	7	5	0	2	0	0	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	a0008	796	5	2	1	1	0	1	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	a0009	796	4	4	0	0	0	0	copy fasta	TLR6	chr4	38817897	38861817