JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TM7SF2_chr11_65106872_65121230	0/0	a0007	418	1	0	0	0	0	1	copy fasta	TM7SF2	chr11	65106872	65121230
TM7SF3_chr12_26966579_27019384	1/1	a0001	570	381	73	64	181	16	45	copy fasta	TM7SF3	chr12	26966579	27019384
TM7SF3_chr12_26966579_27019384	0/0	a0002	570	31	2	7	22	0	0	copy fasta	TM7SF3	chr12	26966579	27019384
TM7SF3_chr12_26966579_27019384	0/0	a0003	570	9	9	0	0	0	0	copy fasta	TM7SF3	chr12	26966579	27019384
TM7SF3_chr12_26966579_27019384	0/0	a0004	570	3	0	1	0	0	2	copy fasta	TM7SF3	chr12	26966579	27019384
TM7SF3_chr12_26966579_27019384	0/0	a0005	570	2	2	0	0	0	0	copy fasta	TM7SF3	chr12	26966579	27019384
TM7SF3_chr12_26966579_27019384	0/0	a0006	570	1	0	0	1	0	0	copy fasta	TM7SF3	chr12	26966579	27019384
TM7SF3_chr12_26966579_27019384	0/0	a0007	570	1	0	0	1	0	0	copy fasta	TM7SF3	chr12	26966579	27019384
TM7SF3_chr12_26966579_27019384	0/0	a0008	570	1	0	0	1	0	0	copy fasta	TM7SF3	chr12	26966579	27019384
TM7SF3_chr12_26966579_27019384	0/0	a0009	570	1	0	0	0	0	1	copy fasta	TM7SF3	chr12	26966579	27019384
TM9SF1_chr14_24184149_24200441	1/1	a0001	606	411	85	62	206	13	43	copy fasta	TM9SF1	chr14	24184149	24200441
TM9SF1_chr14_24184149_24200441	0/0	a0002	606	16	1	9	0	3	3	copy fasta	TM9SF1	chr14	24184149	24200441
TM9SF1_chr14_24184149_24200441	0/0	a0003	606	3	3	0	0	0	0	copy fasta	TM9SF1	chr14	24184149	24200441
TM9SF1_chr14_24184149_24200441	0/0	a0004	606	1	0	1	0	0	0	copy fasta	TM9SF1	chr14	24184149	24200441
TM9SF1_chr14_24184149_24200441	0/0	a0005	606	1	1	0	0	0	0	copy fasta	TM9SF1	chr14	24184149	24200441
TM9SF1_chr14_24184149_24200441	0/0	a0006	606	1	0	1	0	0	0	copy fasta	TM9SF1	chr14	24184149	24200441
TM9SF1_chr14_24184149_24200441	0/0	a0007	606	1	0	1	0	0	0	copy fasta	TM9SF1	chr14	24184149	24200441
TM9SF2_chr13_99496472_99569048	1/1	a0001	663	332	86	52	138	18	36	copy fasta	TM9SF2	chr13	99496472	99569048
TM9SF3_chr10_96513110_96592012	1/1	a0001	589	346	92	55	145	14	38	copy fasta	TM9SF3	chr10	96513110	96592012
TM9SF3_chr10_96513110_96592012	0/0	a0002	589	1	0	1	0	0	0	copy fasta	TM9SF3	chr10	96513110	96592012
TM9SF3_chr10_96513110_96592012	0/0	a0003	589	1	0	0	1	0	0	copy fasta	TM9SF3	chr10	96513110	96592012
TM9SF4_chr20_32104714_32172256	1/1	a0001	642	297	94	61	102	12	26	copy fasta	TM9SF4	chr20	32104714	32172256
TM9SF4_chr20_32104714_32172256	0/0	a0002	642	1	0	1	0	0	0	copy fasta	TM9SF4	chr20	32104714	32172256
TMA16_chr4_163489690_163525539	1/0	a0001	203	269	59	33	131	8	37	copy fasta	TMA16	chr4	163489690	163525539
TMA16_chr4_163489690_163525539	0/1	a0002	203	139	24	32	67	8	7	copy fasta	TMA16	chr4	163489690	163525539
TMA16_chr4_163489690_163525539	0/0	a0003	203	8	7	1	0	0	0	copy fasta	TMA16	chr4	163489690	163525539
TMA16_chr4_163489690_163525539	0/0	a0004	203	5	0	0	5	0	0	copy fasta	TMA16	chr4	163489690	163525539
TMA16_chr4_163489690_163525539	0/0	a0005	203	1	0	0	1	0	0	copy fasta	TMA16	chr4	163489690	163525539
TMA7B_chr22_39955397_39969905	1/1	a0001	64	427	94	82	187	16	46	copy fasta	TMA7B	chr22	39955397	39969905
TMA7B_chr22_39955397_39969905	0/0	a0002	64	1	0	0	1	0	0	copy fasta	TMA7B	chr22	39955397	39969905
TMA7_chr3_48435257_48449208	0/0	a0000	0	1	0	0	1	0	0	copy fasta	TMA7	chr3	48435257	48449208
TMA7_chr3_48435257_48449208	0/0	a0001	64	389	88	72	175	16	38	copy fasta	TMA7	chr3	48435257	48449208
TMBIM1_chr2_218269197_218297503	1/1	a0001	311	203	80	34	66	8	13	copy fasta	TMBIM1	chr2	218269197	218297503
TMBIM1_chr2_218269197_218297503	0/0	a0002	311	147	7	37	76	8	19	copy fasta	TMBIM1	chr2	218269197	218297503
TMBIM1_chr2_218269197_218297503	0/0	a0003	311	1	0	0	0	0	1	copy fasta	TMBIM1	chr2	218269197	218297503
TMBIM1_chr2_218269197_218297503	0/0	a0004	311	1	0	0	1	0	0	copy fasta	TMBIM1	chr2	218269197	218297503
TMBIM1_chr2_218269197_218297503	0/0	a0005	311	1	0	0	0	0	1	copy fasta	TMBIM1	chr2	218269197	218297503
TMBIM1_chr2_218269197_218297503	0/0	a0006	311	1	0	0	1	0	0	copy fasta	TMBIM1	chr2	218269197	218297503
TMBIM1_chr2_218269197_218297503	0/0	a0007	311	1	1	0	0	0	0	copy fasta	TMBIM1	chr2	218269197	218297503
TMBIM1_chr2_218269197_218297503	0/0	a0008	311	1	0	1	0	0	0	copy fasta	TMBIM1	chr2	218269197	218297503
TMBIM4_chr12_66130846_66174996	0/0	a0001	238	194	25	19	128	4	18	copy fasta	TMBIM4	chr12	66130846	66174996
TMBIM4_chr12_66130846_66174996	1/1	a0002	238	158	59	43	20	12	22	copy fasta	TMBIM4	chr12	66130846	66174996
TMBIM6_chr12_49736557_49769934	1/1	a0001	237	300	78	60	124	12	24	copy fasta	TMBIM6	chr12	49736557	49769934
TMBIM6_chr12_49736557_49769934	0/0	a0002	237	4	0	0	4	0	0	copy fasta	TMBIM6	chr12	49736557	49769934
TMC1_chr9_72516608_72843297	1/1	a0001	760	126	44	31	34	5	10	copy fasta	TMC1	chr9	72516608	72843297
TMC1_chr9_72516608_72843297	0/0	a0002	760	54	13	11	24	1	5	copy fasta	TMC1	chr9	72516608	72843297
TMC1_chr9_72516608_72843297	0/0	a0003	760	1	1	0	0	0	0	copy fasta	TMC1	chr9	72516608	72843297
TMC1_chr9_72516608_72843297	0/0	a0004	760	1	0	0	0	0	1	copy fasta	TMC1	chr9	72516608	72843297
TMC2_chr20_2531573_2648580	0/1	a0001	906	141	26	31	53	6	24	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	1/0	a0002	906	118	18	25	64	5	5	copy fasta	TMC2	chr20	2531573	2648580