JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TMC2_chr20_2531573_2648580	0/0	a0003	906	25	14	0	4	4	3	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	a0004	906	19	1	1	12	1	4	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	a0005	905	6	0	0	6	0	0	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	a0006	905	5	0	0	5	0	0	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	a0007	906	3	3	0	0	0	0	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	a0008	906	3	3	0	0	0	0	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	a0009	906	3	2	1	0	0	0	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	a0010	906	2	2	0	0	0	0	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	a0011	906	2	2	0	0	0	0	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	a0012	906	2	2	0	0	0	0	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	a0013	906	2	2	0	0	0	0	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	a0014	906	1	0	0	1	0	0	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	a0015	906	1	1	0	0	0	0	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	a0016	906	1	1	0	0	0	0	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	a0017	906	1	1	0	0	0	0	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	a0018	906	1	1	0	0	0	0	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	a0019	906	1	1	0	0	0	0	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	a0020	906	1	0	0	1	0	0	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	a0021	906	1	0	0	0	0	1	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	a0022	906	1	0	0	0	0	1	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	a0023	906	1	1	0	0	0	0	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	a0024	906	1	1	0	0	0	0	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	a0025	906	1	1	0	0	0	0	copy fasta	TMC2	chr20	2531573	2648580
TMC2_chr20_2531573_2648580	0/0	a0026	906	1	1	0	0	0	0	copy fasta	TMC2	chr20	2531573	2648580
TMC3_chr15_81326088_81379213	0/1	a0001	1100	149	16	29	81	10	12	copy fasta	TMC3	chr15	81326088	81379213
TMC3_chr15_81326088_81379213	1/0	a0002	1100	77	10	11	42	1	12	copy fasta	TMC3	chr15	81326088	81379213
TMC3_chr15_81326088_81379213	0/0	a0003	1100	57	34	7	14	2	0	copy fasta	TMC3	chr15	81326088	81379213
TMC3_chr15_81326088_81379213	0/0	a0004	1100	31	2	4	23	0	2	copy fasta	TMC3	chr15	81326088	81379213
TMC3_chr15_81326088_81379213	0/0	a0005	1100	21	0	0	21	0	0	copy fasta	TMC3	chr15	81326088	81379213
TMC3_chr15_81326088_81379213	0/0	a0006	1100	7	4	2	0	0	1	copy fasta	TMC3	chr15	81326088	81379213
TMC3_chr15_81326088_81379213	0/0	a0007	1100	7	6	1	0	0	0	copy fasta	TMC3	chr15	81326088	81379213
TMC3_chr15_81326088_81379213	0/0	a0008	1100	6	6	0	0	0	0	copy fasta	TMC3	chr15	81326088	81379213
TMC3_chr15_81326088_81379213	0/0	a0009	1100	4	3	1	0	0	0	copy fasta	TMC3	chr15	81326088	81379213
TMC3_chr15_81326088_81379213	0/0	a0010	1100	3	3	0	0	0	0	copy fasta	TMC3	chr15	81326088	81379213
TMC3_chr15_81326088_81379213	0/0	a0011	1100	3	3	0	0	0	0	copy fasta	TMC3	chr15	81326088	81379213
TMC3_chr15_81326088_81379213	0/0	a0012	1100	3	0	3	0	0	0	copy fasta	TMC3	chr15	81326088	81379213
TMC3_chr15_81326088_81379213	0/0	a0013	1100	3	3	0	0	0	0	copy fasta	TMC3	chr15	81326088	81379213
TMC3_chr15_81326088_81379213	0/0	a0014	1100	3	2	1	0	0	0	copy fasta	TMC3	chr15	81326088	81379213
TMC3_chr15_81326088_81379213	0/0	a0015	1100	2	0	0	2	0	0	copy fasta	TMC3	chr15	81326088	81379213
TMC3_chr15_81326088_81379213	0/0	a0016	1100	1	1	0	0	0	0	copy fasta	TMC3	chr15	81326088	81379213
TMC3_chr15_81326088_81379213	0/0	a0017	1100	1	0	0	0	0	1	copy fasta	TMC3	chr15	81326088	81379213
TMC3_chr15_81326088_81379213	0/0	a0018	1100	1	0	0	1	0	0	copy fasta	TMC3	chr15	81326088	81379213
TMC3_chr15_81326088_81379213	0/0	a0019	1100	1	1	0	0	0	0	copy fasta	TMC3	chr15	81326088	81379213
TMC3_chr15_81326088_81379213	0/0	a0020	1100	1	0	0	0	1	0	copy fasta	TMC3	chr15	81326088	81379213
TMC3_chr15_81326088_81379213	0/0	a0021	1100	1	1	0	0	0	0	copy fasta	TMC3	chr15	81326088	81379213
TMC3_chr15_81326088_81379213	0/0	a0022	1100	1	0	0	1	0	0	copy fasta	TMC3	chr15	81326088	81379213
TMC3_chr15_81326088_81379213	0/0	a0023	1100	1	1	0	0	0	0	copy fasta	TMC3	chr15	81326088	81379213
TMC3_chr15_81326088_81379213	0/0	a0024	1044	1	0	1	0	0	0	copy fasta	TMC3	chr15	81326088	81379213
TMC3_chr15_81326088_81379213	0/0	a0025	1100	1	1	0	0	0	0	copy fasta	TMC3	chr15	81326088	81379213
TMC3_chr15_81326088_81379213	0/0	a0026	1100	1	1	0	0	0	0	copy fasta	TMC3	chr15	81326088	81379213