JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TMC3_chr15_81326088_81379213	0/0	a0027	1100	1	1	0	0	0	0	copy fasta	TMC3	chr15	81326088	81379213
TMC3_chr15_81326088_81379213	0/0	a0028	1100	1	0	0	1	0	0	copy fasta	TMC3	chr15	81326088	81379213
TMC3_chr15_81326088_81379213	0/0	a0029	1100	1	1	0	0	0	0	copy fasta	TMC3	chr15	81326088	81379213
TMC4_chr19_54155108_54178160	0/0	a0001	706	182	26	44	90	8	14	copy fasta	TMC4	chr19	54155108	54178160
TMC4_chr19_54155108_54178160	0/0	a0002	706	71	12	19	20	5	15	copy fasta	TMC4	chr19	54155108	54178160
TMC4_chr19_54155108_54178160	0/0	a0003	706	71	32	13	16	3	7	copy fasta	TMC4	chr19	54155108	54178160
TMC4_chr19_54155108_54178160	0/1	a0004	706	30	9	4	7	1	8	copy fasta	TMC4	chr19	54155108	54178160
TMC4_chr19_54155108_54178160	0/0	a0005	706	15	7	1	6	1	0	copy fasta	TMC4	chr19	54155108	54178160
TMC4_chr19_54155108_54178160	0/0	a0006	705	15	0	1	14	0	0	copy fasta	TMC4	chr19	54155108	54178160
TMC4_chr19_54155108_54178160	0/0	a0007	706	9	7	0	1	0	1	copy fasta	TMC4	chr19	54155108	54178160
TMC4_chr19_54155108_54178160	0/0	a0008	706	3	0	0	3	0	0	copy fasta	TMC4	chr19	54155108	54178160
TMC4_chr19_54155108_54178160	0/0	a0009	706	2	0	0	2	0	0	copy fasta	TMC4	chr19	54155108	54178160
TMC4_chr19_54155108_54178160	0/0	a0010	44	1	0	0	1	0	0	copy fasta	TMC4	chr19	54155108	54178160
TMC4_chr19_54155108_54178160	0/0	a0011	706	1	1	0	0	0	0	copy fasta	TMC4	chr19	54155108	54178160
TMC4_chr19_54155108_54178160	0/0	a0012	706	1	1	0	0	0	0	copy fasta	TMC4	chr19	54155108	54178160
TMC4_chr19_54155108_54178160	0/0	a0013	706	1	1	0	0	0	0	copy fasta	TMC4	chr19	54155108	54178160
TMC4_chr19_54155108_54178160	0/0	a0014	705	1	0	0	1	0	0	copy fasta	TMC4	chr19	54155108	54178160
TMC4_chr19_54155108_54178160	0/0	a0015	706	1	0	0	1	0	0	copy fasta	TMC4	chr19	54155108	54178160
TMC4_chr19_54155108_54178160	0/0	a0016	706	1	1	0	0	0	0	copy fasta	TMC4	chr19	54155108	54178160
TMC4_chr19_54155108_54178160	0/0	a0017	706	1	0	0	0	0	1	copy fasta	TMC4	chr19	54155108	54178160
TMC4_chr19_54155108_54178160	0/0	a0018	706	1	1	0	0	0	0	copy fasta	TMC4	chr19	54155108	54178160
TMC5_chr16_19412883_19504113	1/0	a0001	1006	278	85	54	110	7	21	copy fasta	TMC5	chr16	19412883	19504113
TMC5_chr16_19412883_19504113	0/1	a0002	1006	38	1	3	26	0	7	copy fasta	TMC5	chr16	19412883	19504113
TMC5_chr16_19412883_19504113	0/0	a0003	1006	4	2	1	0	1	0	copy fasta	TMC5	chr16	19412883	19504113
TMC5_chr16_19412883_19504113	0/0	a0004	1006	2	2	0	0	0	0	copy fasta	TMC5	chr16	19412883	19504113
TMC5_chr16_19412883_19504113	0/0	a0005	1006	2	0	0	0	0	2	copy fasta	TMC5	chr16	19412883	19504113
TMC5_chr16_19412883_19504113	0/0	a0006	1006	2	0	0	2	0	0	copy fasta	TMC5	chr16	19412883	19504113
TMC5_chr16_19412883_19504113	0/0	a0007	1006	1	0	1	0	0	0	copy fasta	TMC5	chr16	19412883	19504113
TMC5_chr16_19412883_19504113	0/0	a0008	1006	1	1	0	0	0	0	copy fasta	TMC5	chr16	19412883	19504113
TMC5_chr16_19412883_19504113	0/0	a0009	1006	1	1	0	0	0	0	copy fasta	TMC5	chr16	19412883	19504113
TMC5_chr16_19412883_19504113	0/0	a0010	1006	1	1	0	0	0	0	copy fasta	TMC5	chr16	19412883	19504113
TMC5_chr16_19412883_19504113	0/0	a0011	1006	1	1	0	0	0	0	copy fasta	TMC5	chr16	19412883	19504113
TMC5_chr16_19412883_19504113	0/0	a0012	1006	1	1	0	0	0	0	copy fasta	TMC5	chr16	19412883	19504113
TMC5_chr16_19412883_19504113	0/0	a0013	1006	1	0	1	0	0	0	copy fasta	TMC5	chr16	19412883	19504113
TMC5_chr16_19412883_19504113	0/0	a0014	1006	1	0	0	1	0	0	copy fasta	TMC5	chr16	19412883	19504113
TMC5_chr16_19412883_19504113	0/0	a0015	1006	1	0	0	1	0	0	copy fasta	TMC5	chr16	19412883	19504113
TMC5_chr16_19412883_19504113	0/0	a0016	1006	1	1	0	0	0	0	copy fasta	TMC5	chr16	19412883	19504113
TMC6_chr17_78102397_78133755	1/1	a0001	805	185	32	41	72	11	27	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	a0002	805	69	20	21	13	4	11	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	a0003	805	69	3	15	47	1	3	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	a0004	805	46	16	3	24	1	2	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	a0005	805	42	10	2	27	0	3	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	a0006	805	8	0	0	7	0	1	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	a0007	805	6	6	0	0	0	0	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	a0008	805	3	3	0	0	0	0	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	a0009	805	2	2	0	0	0	0	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	a0010	805	1	0	0	0	0	1	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	a0011	805	1	0	0	1	0	0	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	a0012	805	1	1	0	0	0	0	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	a0013	805	1	0	0	1	0	0	copy fasta	TMC6	chr17	78102397	78133755