JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TMC6_chr17_78102397_78133755	0/0	a0014	819	1	0	0	1	0	0	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	a0015	805	1	0	0	1	0	0	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	a0016	805	1	0	0	1	0	0	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	a0017	805	1	1	0	0	0	0	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	a0018	805	1	0	0	0	1	0	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	a0019	805	1	1	0	0	0	0	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	a0020	805	1	0	0	1	0	0	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	a0021	805	1	1	0	0	0	0	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	a0022	805	1	1	0	0	0	0	copy fasta	TMC6	chr17	78102397	78133755
TMC6_chr17_78102397_78133755	0/0	a0023	805	1	1	0	0	0	0	copy fasta	TMC6	chr17	78102397	78133755
TMC7_chr16_18978934_19068942	1/1	a0001	723	140	59	28	30	4	17	copy fasta	TMC7	chr16	18978934	19068942
TMC7_chr16_18978934_19068942	0/0	a0002	723	126	13	28	61	5	19	copy fasta	TMC7	chr16	18978934	19068942
TMC7_chr16_18978934_19068942	0/0	a0003	723	5	5	0	0	0	0	copy fasta	TMC7	chr16	18978934	19068942
TMC7_chr16_18978934_19068942	0/0	a0004	723	4	4	0	0	0	0	copy fasta	TMC7	chr16	18978934	19068942
TMC7_chr16_18978934_19068942	0/0	a0005	723	3	3	0	0	0	0	copy fasta	TMC7	chr16	18978934	19068942
TMC7_chr16_18978934_19068942	0/0	a0006	723	1	0	0	0	1	0	copy fasta	TMC7	chr16	18978934	19068942
TMC7_chr16_18978934_19068942	0/0	a0007	723	1	0	1	0	0	0	copy fasta	TMC7	chr16	18978934	19068942
TMC7_chr16_18978934_19068942	0/0	a0008	723	1	0	0	1	0	0	copy fasta	TMC7	chr16	18978934	19068942
TMC7_chr16_18978934_19068942	0/0	a0009	723	1	0	1	0	0	0	copy fasta	TMC7	chr16	18978934	19068942
TMC8_chr17_78125771_78147968	0/0	a0001	726	247	69	48	98	9	23	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	1/0	a0002	726	182	25	28	102	7	19	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	0/0	a0003	726	4	3	0	0	0	1	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	0/0	a0004	726	3	0	3	0	0	0	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	0/0	a0005	726	3	0	0	0	0	3	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	0/0	a0006	726	3	0	1	0	0	2	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	0/0	a0007	726	3	0	1	0	1	1	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	0/0	a0008	726	1	1	0	0	0	0	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	0/0	a0009	726	1	0	1	0	0	0	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	0/0	a0010	726	1	0	0	0	0	1	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	0/0	a0011	726	1	0	0	1	0	0	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	0/0	a0012	726	1	0	0	1	0	0	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	0/0	a0013	726	1	0	0	0	1	0	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	0/0	a0014	726	1	0	1	0	0	0	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	0/0	a0015	726	1	0	1	0	0	0	copy fasta	TMC8	chr17	78125771	78147968
TMC8_chr17_78125771_78147968	0/1	a0016	726	1	0	0	0	0	0	copy fasta	TMC8	chr17	78125771	78147968
TMCC1_chr3_129642792_129898711	0/1	a0001	653	242	63	41	99	10	28	copy fasta	TMCC1	chr3	129642792	129898711
TMCC1_chr3_129642792_129898711	1/0	a0002	653	14	11	1	1	0	0	copy fasta	TMCC1	chr3	129642792	129898711
TMCC1_chr3_129642792_129898711	0/0	a0003	653	1	0	0	1	0	0	copy fasta	TMCC1	chr3	129642792	129898711
TMCC1_chr3_129642792_129898711	0/0	a0004	653	1	0	0	1	0	0	copy fasta	TMCC1	chr3	129642792	129898711
TMCC2_chr1_205222946_205278343	1/1	a0001	709	350	89	64	137	18	40	copy fasta	TMCC2	chr1	205222946	205278343
TMCC2_chr1_205222946_205278343	0/0	a0002	709	17	0	2	13	0	2	copy fasta	TMCC2	chr1	205222946	205278343
TMCC2_chr1_205222946_205278343	0/0	a0003	709	3	3	0	0	0	0	copy fasta	TMCC2	chr1	205222946	205278343
TMCC2_chr1_205222946_205278343	0/0	a0004	709	1	0	0	1	0	0	copy fasta	TMCC2	chr1	205222946	205278343
TMCC2_chr1_205222946_205278343	0/0	a0005	709	1	0	0	1	0	0	copy fasta	TMCC2	chr1	205222946	205278343
TMCC3_chr12_94562122_94655557	0/1	a0001	477	355	85	68	147	16	38	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	a0002	477	6	6	0	0	0	0	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	1/0	a0003	477	4	1	1	1	0	0	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	a0004	477	3	3	0	0	0	0	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	a0005	477	2	0	2	0	0	0	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	a0006	477	2	0	1	1	0	0	copy fasta	TMCC3	chr12	94562122	94655557