JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TMCC3_chr12_94562122_94655557	0/0	a0007	477	2	0	0	1	0	1	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	a0008	477	1	1	0	0	0	0	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	a0009	477	1	0	1	0	0	0	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	a0010	477	1	0	1	0	0	0	copy fasta	TMCC3	chr12	94562122	94655557
TMCC3_chr12_94562122_94655557	0/0	a0011	477	1	0	0	0	0	1	copy fasta	TMCC3	chr12	94562122	94655557
TMCO1_chr1_165721795_165773868	1/1	a0001	188	374	84	76	150	16	46	copy fasta	TMCO1	chr1	165721795	165773868
TMCO2_chr1_40242937_40256684	1/1	a0001	182	417	90	62	200	17	46	copy fasta	TMCO2	chr1	40242937	40256684
TMCO2_chr1_40242937_40256684	0/0	a0002	182	5	1	4	0	0	0	copy fasta	TMCO2	chr1	40242937	40256684
TMCO2_chr1_40242937_40256684	0/0	a0003	182	2	0	2	0	0	0	copy fasta	TMCO2	chr1	40242937	40256684
TMCO2_chr1_40242937_40256684	0/0	a0004	182	2	1	0	0	1	0	copy fasta	TMCO2	chr1	40242937	40256684
TMCO3_chr13_113486021_113555229	1/1	a0001	677	205	32	43	97	11	20	copy fasta	TMCO3	chr13	113486021	113555229
TMCO3_chr13_113486021_113555229	0/0	a0002	677	75	19	15	30	1	10	copy fasta	TMCO3	chr13	113486021	113555229
TMCO3_chr13_113486021_113555229	0/0	a0003	677	74	28	13	25	2	6	copy fasta	TMCO3	chr13	113486021	113555229
TMCO3_chr13_113486021_113555229	0/0	a0004	677	3	3	0	0	0	0	copy fasta	TMCO3	chr13	113486021	113555229
TMCO3_chr13_113486021_113555229	0/0	a0005	677	2	0	0	2	0	0	copy fasta	TMCO3	chr13	113486021	113555229
TMCO3_chr13_113486021_113555229	0/0	a0006	677	2	0	0	2	0	0	copy fasta	TMCO3	chr13	113486021	113555229
TMCO3_chr13_113486021_113555229	0/0	a0007	677	1	0	0	1	0	0	copy fasta	TMCO3	chr13	113486021	113555229
TMCO3_chr13_113486021_113555229	0/0	a0008	677	1	0	1	0	0	0	copy fasta	TMCO3	chr13	113486021	113555229
TMCO3_chr13_113486021_113555229	0/0	a0009	677	1	0	0	1	0	0	copy fasta	TMCO3	chr13	113486021	113555229
TMCO3_chr13_113486021_113555229	0/0	a0010	677	1	1	0	0	0	0	copy fasta	TMCO3	chr13	113486021	113555229
TMCO3_chr13_113486021_113555229	0/0	a0011	677	1	1	0	0	0	0	copy fasta	TMCO3	chr13	113486021	113555229
TMCO3_chr13_113486021_113555229	0/0	a0012	677	1	1	0	0	0	0	copy fasta	TMCO3	chr13	113486021	113555229
TMCO3_chr13_113486021_113555229	0/0	a0013	677	1	1	0	0	0	0	copy fasta	TMCO3	chr13	113486021	113555229
TMCO4_chr1_19677240_19804916	1/0	a0001	634	103	29	14	44	2	13	copy fasta	TMCO4	chr1	19677240	19804916
TMCO4_chr1_19677240_19804916	0/0	a0002	634	68	13	17	19	4	15	copy fasta	TMCO4	chr1	19677240	19804916
TMCO4_chr1_19677240_19804916	0/1	a0003	634	67	24	13	22	3	4	copy fasta	TMCO4	chr1	19677240	19804916
TMCO4_chr1_19677240_19804916	0/0	a0004	634	32	6	9	8	0	9	copy fasta	TMCO4	chr1	19677240	19804916
TMCO4_chr1_19677240_19804916	0/0	a0005	634	10	0	3	7	0	0	copy fasta	TMCO4	chr1	19677240	19804916
TMCO4_chr1_19677240_19804916	0/0	a0006	634	7	6	1	0	0	0	copy fasta	TMCO4	chr1	19677240	19804916
TMCO4_chr1_19677240_19804916	0/0	a0007	634	4	4	0	0	0	0	copy fasta	TMCO4	chr1	19677240	19804916
TMCO4_chr1_19677240_19804916	0/0	a0008	634	4	4	0	0	0	0	copy fasta	TMCO4	chr1	19677240	19804916
TMCO4_chr1_19677240_19804916	0/0	a0009	634	3	0	1	2	0	0	copy fasta	TMCO4	chr1	19677240	19804916
TMCO4_chr1_19677240_19804916	0/0	a0010	634	1	1	0	0	0	0	copy fasta	TMCO4	chr1	19677240	19804916
TMCO4_chr1_19677240_19804916	0/0	a0011	634	1	0	0	1	0	0	copy fasta	TMCO4	chr1	19677240	19804916
TMCO4_chr1_19677240_19804916	0/0	a0012	634	1	1	0	0	0	0	copy fasta	TMCO4	chr1	19677240	19804916
TMCO4_chr1_19677240_19804916	0/0	a0013	634	1	0	0	1	0	0	copy fasta	TMCO4	chr1	19677240	19804916
TMCO4_chr1_19677240_19804916	0/0	a0014	634	1	0	0	1	0	0	copy fasta	TMCO4	chr1	19677240	19804916
TMCO4_chr1_19677240_19804916	0/0	a0015	634	1	0	0	0	0	1	copy fasta	TMCO4	chr1	19677240	19804916
TMCO4_chr1_19677240_19804916	0/0	a0016	634	1	0	0	1	0	0	copy fasta	TMCO4	chr1	19677240	19804916
TMCO4_chr1_19677240_19804916	0/0	a0017	634	1	0	0	1	0	0	copy fasta	TMCO4	chr1	19677240	19804916
TMCO4_chr1_19677240_19804916	0/0	a0018	634	1	0	0	0	1	0	copy fasta	TMCO4	chr1	19677240	19804916
TMCO4_chr1_19677240_19804916	0/0	a0019	634	1	1	0	0	0	0	copy fasta	TMCO4	chr1	19677240	19804916
TMCO4_chr1_19677240_19804916	0/0	a0020	634	1	0	0	1	0	0	copy fasta	TMCO4	chr1	19677240	19804916
TMCO4_chr1_19677240_19804916	0/0	a0021	634	1	0	0	1	0	0	copy fasta	TMCO4	chr1	19677240	19804916
TMCO4_chr1_19677240_19804916	0/0	a0022	634	1	0	0	1	0	0	copy fasta	TMCO4	chr1	19677240	19804916
TMCO4_chr1_19677240_19804916	0/0	a0023	634	1	1	0	0	0	0	copy fasta	TMCO4	chr1	19677240	19804916
TMCO5A_chr15_37929640_37956422	1/1	a0001	288	353	84	74	144	15	34	copy fasta	TMCO5A	chr15	37929640	37956422
TMCO5A_chr15_37929640_37956422	0/0	a0002	288	4	4	0	0	0	0	copy fasta	TMCO5A	chr15	37929640	37956422
TMCO5A_chr15_37929640_37956422	0/0	a0003	288	1	0	0	0	1	0	copy fasta	TMCO5A	chr15	37929640	37956422
TMCO5A_chr15_37929640_37956422	0/0	a0004	288	1	1	0	0	0	0	copy fasta	TMCO5A	chr15	37929640	37956422