JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TMCO5A_chr15_37929640_37956422	0/0	a0005	288	1	1	0	0	0	0	copy fasta	TMCO5A	chr15	37929640	37956422
TMCO6_chr5_140634451_140650404	1/0	a0001	493	291	89	43	118	11	29	copy fasta	TMCO6	chr5	140634451	140650404
TMCO6_chr5_140634451_140650404	0/1	a0002	493	104	4	14	67	7	11	copy fasta	TMCO6	chr5	140634451	140650404
TMCO6_chr5_140634451_140650404	0/0	a0003	493	4	0	0	4	0	0	copy fasta	TMCO6	chr5	140634451	140650404
TMCO6_chr5_140634451_140650404	0/0	a0004	493	2	1	1	0	0	0	copy fasta	TMCO6	chr5	140634451	140650404
TMCO6_chr5_140634451_140650404	0/0	a0005	493	1	1	0	0	0	0	copy fasta	TMCO6	chr5	140634451	140650404
TMCO6_chr5_140634451_140650404	0/0	a0006	493	1	0	0	1	0	0	copy fasta	TMCO6	chr5	140634451	140650404
TMCO6_chr5_140634451_140650404	0/0	a0007	493	1	0	0	1	0	0	copy fasta	TMCO6	chr5	140634451	140650404
TMCO6_chr5_140634451_140650404	0/0	a0008	493	1	1	0	0	0	0	copy fasta	TMCO6	chr5	140634451	140650404
TMCO6_chr5_140634451_140650404	0/0	a0009	52	1	0	0	1	0	0	copy fasta	TMCO6	chr5	140634451	140650404
TMDD1_chr12_51808921_51819925	0/1	a0001	319	321	59	48	166	15	32	copy fasta	TMDD1	chr12	51808921	51819925
TMDD1_chr12_51808921_51819925	1/0	a0002	317	39	12	7	3	1	15	copy fasta	TMDD1	chr12	51808921	51819925
TMDD1_chr12_51808921_51819925	0/0	a0003	319	9	9	0	0	0	0	copy fasta	TMDD1	chr12	51808921	51819925
TMDD1_chr12_51808921_51819925	0/0	a0004	319	6	6	0	0	0	0	copy fasta	TMDD1	chr12	51808921	51819925
TMDD1_chr12_51808921_51819925	0/0	a0005	319	6	5	1	0	0	0	copy fasta	TMDD1	chr12	51808921	51819925
TMDD1_chr12_51808921_51819925	0/0	a0006	317	4	0	3	0	0	1	copy fasta	TMDD1	chr12	51808921	51819925
TMDD1_chr12_51808921_51819925	0/0	a0007	317	2	2	0	0	0	0	copy fasta	TMDD1	chr12	51808921	51819925
TMDD1_chr12_51808921_51819925	0/0	a0008	319	1	1	0	0	0	0	copy fasta	TMDD1	chr12	51808921	51819925
TMDD1_chr12_51808921_51819925	0/0	a0009	319	1	0	1	0	0	0	copy fasta	TMDD1	chr12	51808921	51819925
TMDD1_chr12_51808921_51819925	0/0	a0010	317	1	1	0	0	0	0	copy fasta	TMDD1	chr12	51808921	51819925
TMDD1_chr12_51808921_51819925	0/0	a0011	319	1	0	0	1	0	0	copy fasta	TMDD1	chr12	51808921	51819925
TMDD1_chr12_51808921_51819925	0/0	a0012	319	1	0	0	1	0	0	copy fasta	TMDD1	chr12	51808921	51819925
TMDD1_chr12_51808921_51819925	0/0	a0013	319	1	0	0	1	0	0	copy fasta	TMDD1	chr12	51808921	51819925
TMDD1_chr12_51808921_51819925	0/0	a0014	319	1	1	0	0	0	0	copy fasta	TMDD1	chr12	51808921	51819925
TMED10_chr14_75126469_75181612	1/1	a0001	219	261	86	48	85	8	32	copy fasta	TMED10	chr14	75126469	75181612
TMED10_chr14_75126469_75181612	0/0	a0002	219	1	0	0	1	0	0	copy fasta	TMED10	chr14	75126469	75181612
TMED1_chr19_10827067_10841212	1/1	a0001	227	397	88	64	186	16	41	copy fasta	TMED1	chr19	10827067	10841212
TMED1_chr19_10827067_10841212	0/0	a0002	227	1	1	0	0	0	0	copy fasta	TMED1	chr19	10827067	10841212
TMED1_chr19_10827067_10841212	0/0	a0003	227	1	0	0	0	0	1	copy fasta	TMED1	chr19	10827067	10841212
TMED1_chr19_10827067_10841212	0/0	a0004	227	1	0	0	1	0	0	copy fasta	TMED1	chr19	10827067	10841212
TMED1_chr19_10827067_10841212	0/0	a0005	227	1	1	0	0	0	0	copy fasta	TMED1	chr19	10827067	10841212
TMED1_chr19_10827067_10841212	0/0	a0006	227	1	0	0	1	0	0	copy fasta	TMED1	chr19	10827067	10841212
TMED2_chr12_123579552_123603582	1/1	a0001	201	284	92	64	76	18	32	copy fasta	TMED2	chr12	123579552	123603582
TMED3_chr15_79306112_79327840	1/1	a0001	217	431	94	80	189	18	48	copy fasta	TMED3	chr15	79306112	79327840
TMED3_chr15_79306112_79327840	0/0	a0002	217	7	0	2	5	0	0	copy fasta	TMED3	chr15	79306112	79327840
TMED3_chr15_79306112_79327840	0/0	a0003	217	5	0	1	4	0	0	copy fasta	TMED3	chr15	79306112	79327840
TMED3_chr15_79306112_79327840	0/0	a0004	170	1	0	1	0	0	0	copy fasta	TMED3	chr15	79306112	79327840
TMED4_chr7_44572894_44587231	1/1	a0001	227	398	94	78	166	16	42	copy fasta	TMED4	chr7	44572894	44587231
TMED4_chr7_44572894_44587231	0/0	a0002	227	4	4	0	0	0	0	copy fasta	TMED4	chr7	44572894	44587231
TMED5_chr1_93144742_93185413	1/0	a0001	229	217	81	36	76	9	14	copy fasta	TMED5	chr1	93144742	93185413
TMED5_chr1_93144742_93185413	0/1	a0002	229	124	5	31	64	7	16	copy fasta	TMED5	chr1	93144742	93185413
TMED5_chr1_93144742_93185413	0/0	a0003	229	2	2	0	0	0	0	copy fasta	TMED5	chr1	93144742	93185413
TMED5_chr1_93144742_93185413	0/0	a0004	229	1	0	1	0	0	0	copy fasta	TMED5	chr1	93144742	93185413
TMED6_chr16_69338250_69356786	1/1	a0001	240	403	93	73	172	17	46	copy fasta	TMED6	chr16	69338250	69356786
TMED6_chr16_69338250_69356786	0/0	a0002	240	5	1	3	0	1	0	copy fasta	TMED6	chr16	69338250	69356786
TMED6_chr16_69338250_69356786	0/0	a0003	240	1	0	0	1	0	0	copy fasta	TMED6	chr16	69338250	69356786
TMED6_chr16_69338250_69356786	0/0	a0004	240	1	0	0	1	0	0	copy fasta	TMED6	chr16	69338250	69356786
TMED7_chr5_115608210_115631036	1/1	a0001	224	383	94	58	169	14	46	copy fasta	TMED7	chr5	115608210	115631036
TMED7_chr5_115608210_115631036	0/0	a0002	224	2	0	2	0	0	0	copy fasta	TMED7	chr5	115608210	115631036
TMED7_chr5_115608210_115631036	0/0	a0003	224	1	0	0	1	0	0	copy fasta	TMED7	chr5	115608210	115631036