JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TMED8_chr14_77330029_77382094	1/1	a0001	325	211	39	35	119	4	12	copy fasta	TMED8	chr14	77330029	77382094
TMED8_chr14_77330029_77382094	0/0	a0002	325	64	35	9	5	5	10	copy fasta	TMED8	chr14	77330029	77382094
TMED8_chr14_77330029_77382094	0/0	a0003	325	49	11	18	1	7	12	copy fasta	TMED8	chr14	77330029	77382094
TMED8_chr14_77330029_77382094	0/0	a0004	325	1	1	0	0	0	0	copy fasta	TMED8	chr14	77330029	77382094
TMED8_chr14_77330029_77382094	0/0	a0005	325	1	1	0	0	0	0	copy fasta	TMED8	chr14	77330029	77382094
TMED8_chr14_77330029_77382094	0/0	a0006	325	1	0	0	1	0	0	copy fasta	TMED8	chr14	77330029	77382094
TMED8_chr14_77330029_77382094	0/0	a0007	325	1	1	0	0	0	0	copy fasta	TMED8	chr14	77330029	77382094
TMED9_chr5_177587203_177602242	1/1	a0001	235	428	94	74	193	17	48	copy fasta	TMED9	chr5	177587203	177602242
TMED9_chr5_177587203_177602242	0/0	a0002	235	9	4	4	0	1	0	copy fasta	TMED9	chr5	177587203	177602242
TMED9_chr5_177587203_177602242	0/0	a0003	235	1	0	0	1	0	0	copy fasta	TMED9	chr5	177587203	177602242
TMEFF1_chr9_100468149_100582636	1/1	a0001	380	242	72	44	80	12	32	copy fasta	TMEFF1	chr9	100468149	100582636
TMEFF2_chr2_191944046_192199933	1/1	a0001	374	161	69	34	40	6	10	copy fasta	TMEFF2	chr2	191944046	192199933
TMEFF2_chr2_191944046_192199933	0/0	a0002	374	3	3	0	0	0	0	copy fasta	TMEFF2	chr2	191944046	192199933
TMEM100_chr17_55714627_55727864	1/1	a0001	134	428	96	80	202	14	34	copy fasta	TMEM100	chr17	55714627	55727864
TMEM101_chr17_44006188_44019963	1/1	a0001	257	375	90	72	163	10	38	copy fasta	TMEM101	chr17	44006188	44019963
TMEM101_chr17_44006188_44019963	0/0	a0002	257	1	0	0	1	0	0	copy fasta	TMEM101	chr17	44006188	44019963
TMEM102_chr17_7430435_7442679	1/1	a0001	508	332	78	73	125	16	38	copy fasta	TMEM102	chr17	7430435	7442679
TMEM102_chr17_7430435_7442679	0/0	a0002	508	12	11	1	0	0	0	copy fasta	TMEM102	chr17	7430435	7442679
TMEM102_chr17_7430435_7442679	0/0	a0003	508	7	7	0	0	0	0	copy fasta	TMEM102	chr17	7430435	7442679
TMEM102_chr17_7430435_7442679	0/0	a0004	508	6	0	0	6	0	0	copy fasta	TMEM102	chr17	7430435	7442679
TMEM102_chr17_7430435_7442679	0/0	a0005	508	3	0	0	3	0	0	copy fasta	TMEM102	chr17	7430435	7442679
TMEM102_chr17_7430435_7442679	0/0	a0006	508	1	0	0	1	0	0	copy fasta	TMEM102	chr17	7430435	7442679
TMEM102_chr17_7430435_7442679	0/0	a0007	508	1	0	0	1	0	0	copy fasta	TMEM102	chr17	7430435	7442679
TMEM104_chr17_74771499_74844753	0/1	a0001	496	162	56	32	48	7	18	copy fasta	TMEM104	chr17	74771499	74844753
TMEM104_chr17_74771499_74844753	1/0	a0002	496	134	27	29	48	7	22	copy fasta	TMEM104	chr17	74771499	74844753
TMEM104_chr17_74771499_74844753	0/0	a0003	496	2	0	0	2	0	0	copy fasta	TMEM104	chr17	74771499	74844753
TMEM104_chr17_74771499_74844753	0/0	a0004	496	1	1	0	0	0	0	copy fasta	TMEM104	chr17	74771499	74844753
TMEM104_chr17_74771499_74844753	0/0	a0005	496	1	0	0	1	0	0	copy fasta	TMEM104	chr17	74771499	74844753
TMEM104_chr17_74771499_74844753	0/0	a0006	496	1	0	0	0	0	1	copy fasta	TMEM104	chr17	74771499	74844753
TMEM104_chr17_74771499_74844753	0/0	a0007	496	1	0	0	1	0	0	copy fasta	TMEM104	chr17	74771499	74844753
TMEM104_chr17_74771499_74844753	0/0	a0008	496	1	0	1	0	0	0	copy fasta	TMEM104	chr17	74771499	74844753
TMEM104_chr17_74771499_74844753	0/0	a0009	496	1	0	0	0	0	1	copy fasta	TMEM104	chr17	74771499	74844753
TMEM106A_chr17_43206875_43225041	1/1	a0001	262	372	93	76	146	14	41	copy fasta	TMEM106A	chr17	43206875	43225041
TMEM106A_chr17_43206875_43225041	0/0	a0002	262	1	1	0	0	0	0	copy fasta	TMEM106A	chr17	43206875	43225041
TMEM106A_chr17_43206875_43225041	0/0	a0003	258	1	0	0	0	0	1	copy fasta	TMEM106A	chr17	43206875	43225041
TMEM106B_chr7_12206294_12248367	0/1	a0001	274	255	71	34	114	7	28	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	1/0	a0002	274	141	25	34	62	9	10	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106B_chr7_12206294_12248367	0/0	a0003	274	2	0	2	0	0	0	copy fasta	TMEM106B	chr7	12206294	12248367
TMEM106C_chr12_47958596_47973878	1/0	a0001	250	294	83	53	109	13	35	copy fasta	TMEM106C	chr12	47958596	47973878
TMEM106C_chr12_47958596_47973878	0/1	a0002	250	104	0	15	77	2	9	copy fasta	TMEM106C	chr12	47958596	47973878
TMEM106C_chr12_47958596_47973878	0/0	a0003	250	8	6	2	0	0	0	copy fasta	TMEM106C	chr12	47958596	47973878
TMEM106C_chr12_47958596_47973878	0/0	a0004	250	6	0	0	4	1	1	copy fasta	TMEM106C	chr12	47958596	47973878
TMEM106C_chr12_47958596_47973878	0/0	a0005	250	3	3	0	0	0	0	copy fasta	TMEM106C	chr12	47958596	47973878
TMEM106C_chr12_47958596_47973878	0/0	a0006	250	2	0	0	0	0	2	copy fasta	TMEM106C	chr12	47958596	47973878
TMEM106C_chr12_47958596_47973878	0/0	a0007	250	2	0	2	0	0	0	copy fasta	TMEM106C	chr12	47958596	47973878
TMEM106C_chr12_47958596_47973878	0/0	a0008	250	1	0	0	1	0	0	copy fasta	TMEM106C	chr12	47958596	47973878
TMEM106C_chr12_47958596_47973878	0/0	a0009	250	1	0	0	1	0	0	copy fasta	TMEM106C	chr12	47958596	47973878
TMEM106C_chr12_47958596_47973878	0/0	a0010	250	1	0	0	0	0	1	copy fasta	TMEM106C	chr12	47958596	47973878
TMEM107_chr17_8167457_8181380	1/1	a0001	140	434	94	80	196	16	46	copy fasta	TMEM107	chr17	8167457	8181380
TMEM108_chr3_133033391_133402775	1/1	a0001	575	210	71	46	59	8	24	copy fasta	TMEM108	chr3	133033391	133402775