JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
BIN1_chr2_127043032_127112154	0/0	a0006	593	1	0	0	0	0	1	copy fasta	BIN1	chr2	127043032	127112154
BIN2_chr12_51276038_51329174	0/1	a0001	565	285	50	60	128	10	36	copy fasta	BIN2	chr12	51276038	51329174
BIN2_chr12_51276038_51329174	0/0	a0002	565	40	7	3	30	0	0	copy fasta	BIN2	chr12	51276038	51329174
BIN2_chr12_51276038_51329174	1/0	a0003	565	32	26	1	0	0	4	copy fasta	BIN2	chr12	51276038	51329174
BIN2_chr12_51276038_51329174	0/0	a0004	565	31	8	3	16	2	2	copy fasta	BIN2	chr12	51276038	51329174
BIN2_chr12_51276038_51329174	0/0	a0005	565	4	0	3	0	0	1	copy fasta	BIN2	chr12	51276038	51329174
BIN2_chr12_51276038_51329174	0/0	a0006	565	2	0	2	0	0	0	copy fasta	BIN2	chr12	51276038	51329174
BIN2_chr12_51276038_51329174	0/0	a0007	43	1	0	0	0	0	1	copy fasta	BIN2	chr12	51276038	51329174
BIN2_chr12_51276038_51329174	0/0	a0008	565	1	1	0	0	0	0	copy fasta	BIN2	chr12	51276038	51329174
BIN2_chr12_51276038_51329174	0/0	a0009	565	1	0	0	1	0	0	copy fasta	BIN2	chr12	51276038	51329174
BIN2_chr12_51276038_51329174	0/0	a0010	565	1	0	0	1	0	0	copy fasta	BIN2	chr12	51276038	51329174
BIN2_chr12_51276038_51329174	0/0	a0011	565	1	1	0	0	0	0	copy fasta	BIN2	chr12	51276038	51329174
BIN2_chr12_51276038_51329174	0/0	a0012	565	1	1	0	0	0	0	copy fasta	BIN2	chr12	51276038	51329174
BIN3_chr8_22615418_22674121	1/1	a0001	253	382	90	72	161	16	41	copy fasta	BIN3	chr8	22615418	22674121
BIN3_chr8_22615418_22674121	0/0	a0002	253	1	0	0	0	0	1	copy fasta	BIN3	chr8	22615418	22674121
BIN3_chr8_22615418_22674121	0/0	a0003	253	1	1	0	0	0	0	copy fasta	BIN3	chr8	22615418	22674121
BIN3_chr8_22615418_22674121	0/0	a0004	253	1	0	0	1	0	0	copy fasta	BIN3	chr8	22615418	22674121
BIN3_chr8_22615418_22674121	0/0	a0005	253	1	1	0	0	0	0	copy fasta	BIN3	chr8	22615418	22674121
BIRC2_chr11_102342214_102383670	1/0	a0001	618	328	85	68	125	11	38	copy fasta	BIRC2	chr11	102342214	102383670
BIRC2_chr11_102342214_102383670	0/1	a0002	618	8	0	4	0	3	0	copy fasta	BIRC2	chr11	102342214	102383670
BIRC2_chr11_102342214_102383670	0/0	a0003	618	3	3	0	0	0	0	copy fasta	BIRC2	chr11	102342214	102383670
BIRC2_chr11_102342214_102383670	0/0	a0004	618	2	0	0	2	0	0	copy fasta	BIRC2	chr11	102342214	102383670
BIRC2_chr11_102342214_102383670	0/0	a0005	618	2	0	0	2	0	0	copy fasta	BIRC2	chr11	102342214	102383670
BIRC2_chr11_102342214_102383670	0/0	a0006	536	1	0	0	1	0	0	copy fasta	BIRC2	chr11	102342214	102383670
BIRC3_chr11_102312484_102344403	1/1	a0001	604	364	80	74	156	11	41	copy fasta	BIRC3	chr11	102312484	102344403
BIRC3_chr11_102312484_102344403	0/0	a0002	604	14	0	7	6	0	1	copy fasta	BIRC3	chr11	102312484	102344403
BIRC3_chr11_102312484_102344403	0/0	a0003	604	2	0	1	0	1	0	copy fasta	BIRC3	chr11	102312484	102344403
BIRC3_chr11_102312484_102344403	0/0	a0004	604	1	0	0	1	0	0	copy fasta	BIRC3	chr11	102312484	102344403
BIRC3_chr11_102312484_102344403	0/0	a0005	521	1	0	0	1	0	0	copy fasta	BIRC3	chr11	102312484	102344403
BIRC3_chr11_102312484_102344403	0/0	a0006	604	1	1	0	0	0	0	copy fasta	BIRC3	chr11	102312484	102344403
BIRC3_chr11_102312484_102344403	0/0	a0007	604	1	1	0	0	0	0	copy fasta	BIRC3	chr11	102312484	102344403
BIRC5_chr17_78209253_78230635	0/1	a0001	142	376	94	78	145	14	44	copy fasta	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	1/0	a0002	142	56	0	8	43	2	2	copy fasta	BIRC5	chr17	78209253	78230635
BIRC6_chr2_32352023_32623878	0/0	a0001	4857	164	64	32	45	8	15	copy fasta	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	1/1	a0002	4857	93	18	24	41	3	5	copy fasta	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	a0003	4857	3	0	2	0	1	0	copy fasta	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	a0004	4857	3	3	0	0	0	0	copy fasta	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	a0005	4857	2	2	0	0	0	0	copy fasta	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	a0006	4857	2	0	2	0	0	0	copy fasta	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	a0007	4857	1	1	0	0	0	0	copy fasta	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	a0008	4857	1	0	0	1	0	0	copy fasta	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	a0009	4857	1	0	1	0	0	0	copy fasta	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	a0010	4857	1	1	0	0	0	0	copy fasta	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	a0011	4857	1	1	0	0	0	0	copy fasta	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	a0012	4857	1	0	0	1	0	0	copy fasta	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	a0013	4857	1	0	1	0	0	0	copy fasta	BIRC6	chr2	32352023	32623878
BIRC7_chr20_63230905_63245495	1/1	a0001	298	199	40	46	65	12	34	copy fasta	BIRC7	chr20	63230905	63245495
BIRC7_chr20_63230905_63245495	0/0	a0002	298	62	14	6	35	2	5	copy fasta	BIRC7	chr20	63230905	63245495
BIRC7_chr20_63230905_63245495	0/0	a0003	199	12	2	4	6	0	0	copy fasta	BIRC7	chr20	63230905	63245495
BIRC7_chr20_63230905_63245495	0/0	a0004	298	10	9	1	0	0	0	copy fasta	BIRC7	chr20	63230905	63245495