JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TMEM108_chr3_133033391_133402775	0/0	a0002	575	5	1	2	0	0	2	copy fasta	TMEM108	chr3	133033391	133402775
TMEM108_chr3_133033391_133402775	0/0	a0003	575	1	1	0	0	0	0	copy fasta	TMEM108	chr3	133033391	133402775
TMEM108_chr3_133033391_133402775	0/0	a0004	575	1	1	0	0	0	0	copy fasta	TMEM108	chr3	133033391	133402775
TMEM108_chr3_133033391_133402775	0/0	a0005	575	1	1	0	0	0	0	copy fasta	TMEM108	chr3	133033391	133402775
TMEM108_chr3_133033391_133402775	0/0	a0006	575	1	1	0	0	0	0	copy fasta	TMEM108	chr3	133033391	133402775
TMEM108_chr3_133033391_133402775	0/0	a0007	575	1	0	0	1	0	0	copy fasta	TMEM108	chr3	133033391	133402775
TMEM109_chr11_60909158_60928443	1/1	a0001	243	355	91	60	155	12	35	copy fasta	TMEM109	chr11	60909158	60928443
TMEM109_chr11_60909158_60928443	0/0	a0002	243	2	1	0	0	0	1	copy fasta	TMEM109	chr11	60909158	60928443
TMEM109_chr11_60909158_60928443	0/0	a0003	243	1	0	1	0	0	0	copy fasta	TMEM109	chr11	60909158	60928443
TMEM109_chr11_60909158_60928443	0/0	a0004	243	1	0	0	1	0	0	copy fasta	TMEM109	chr11	60909158	60928443
TMEM109_chr11_60909158_60928443	0/0	a0005	243	1	0	0	1	0	0	copy fasta	TMEM109	chr11	60909158	60928443
TMEM109_chr11_60909158_60928443	0/0	a0006	243	1	0	0	1	0	0	copy fasta	TMEM109	chr11	60909158	60928443
TMEM109_chr11_60909158_60928443	0/0	a0007	243	1	0	1	0	0	0	copy fasta	TMEM109	chr11	60909158	60928443
TMEM114_chr16_8564500_8595511	1/1	a0001	223	404	91	70	179	16	46	copy fasta	TMEM114	chr16	8564500	8595511
TMEM114_chr16_8564500_8595511	0/0	a0002	223	6	0	2	4	0	0	copy fasta	TMEM114	chr16	8564500	8595511
TMEM114_chr16_8564500_8595511	0/0	a0003	223	2	0	0	2	0	0	copy fasta	TMEM114	chr16	8564500	8595511
TMEM114_chr16_8564500_8595511	0/0	a0004	223	2	0	2	0	0	0	copy fasta	TMEM114	chr16	8564500	8595511
TMEM114_chr16_8564500_8595511	0/0	a0005	223	1	1	0	0	0	0	copy fasta	TMEM114	chr16	8564500	8595511
TMEM114_chr16_8564500_8595511	0/0	a0006	223	1	0	0	1	0	0	copy fasta	TMEM114	chr16	8564500	8595511
TMEM115_chr3_50349750_50364521	1/1	a0001	351	354	90	62	156	14	30	copy fasta	TMEM115	chr3	50349750	50364521
TMEM116_chr12_111926298_112018165	1/1	a0001	337	231	51	43	105	4	26	copy fasta	TMEM116	chr12	111926298	112018165
TMEM116_chr12_111926298_112018165	0/0	a0002	337	104	40	8	48	2	6	copy fasta	TMEM116	chr12	111926298	112018165
TMEM116_chr12_111926298_112018165	0/0	a0003	337	1	0	1	0	0	0	copy fasta	TMEM116	chr12	111926298	112018165
TMEM116_chr12_111926298_112018165	0/0	a0004	337	1	1	0	0	0	0	copy fasta	TMEM116	chr12	111926298	112018165
TMEM116_chr12_111926298_112018165	0/0	a0005	337	1	0	0	0	0	1	copy fasta	TMEM116	chr12	111926298	112018165
TMEM116_chr12_111926298_112018165	0/0	a0006	337	1	1	0	0	0	0	copy fasta	TMEM116	chr12	111926298	112018165
TMEM116_chr12_111926298_112018165	0/0	a0007	337	1	0	0	1	0	0	copy fasta	TMEM116	chr12	111926298	112018165
TMEM116_chr12_111926298_112018165	0/0	a0008	337	1	1	0	0	0	0	copy fasta	TMEM116	chr12	111926298	112018165
TMEM116_chr12_111926298_112018165	0/0	a0009	337	1	0	0	0	0	1	copy fasta	TMEM116	chr12	111926298	112018165
TMEM117_chr12_43831081_44394758	1/1	a0001	514	109	80	23	0	0	4	copy fasta	TMEM117	chr12	43831081	44394758
TMEM117_chr12_43831081_44394758	0/0	a0002	514	1	0	1	0	0	0	copy fasta	TMEM117	chr12	43831081	44394758
TMEM119_chr12_108584851_108603084	0/1	a0001	283	300	63	43	157	3	33	copy fasta	TMEM119	chr12	108584851	108603084
TMEM119_chr12_108584851_108603084	1/0	a0002	283	120	25	31	39	12	12	copy fasta	TMEM119	chr12	108584851	108603084
TMEM119_chr12_108584851_108603084	0/0	a0003	283	10	8	0	2	0	0	copy fasta	TMEM119	chr12	108584851	108603084
TMEM119_chr12_108584851_108603084	0/0	a0004	283	5	0	1	0	1	3	copy fasta	TMEM119	chr12	108584851	108603084
TMEM119_chr12_108584851_108603084	0/0	a0005	283	3	0	0	3	0	0	copy fasta	TMEM119	chr12	108584851	108603084
TMEM119_chr12_108584851_108603084	0/0	a0006	283	1	0	1	0	0	0	copy fasta	TMEM119	chr12	108584851	108603084
TMEM119_chr12_108584851_108603084	0/0	a0007	283	1	0	1	0	0	0	copy fasta	TMEM119	chr12	108584851	108603084
TMEM119_chr12_108584851_108603084	0/0	a0008	260	1	1	0	0	0	0	copy fasta	TMEM119	chr12	108584851	108603084
TMEM119_chr12_108584851_108603084	0/0	a0009	283	1	0	1	0	0	0	copy fasta	TMEM119	chr12	108584851	108603084
TMEM119_chr12_108584851_108603084	0/0	a0010	283	1	1	0	0	0	0	copy fasta	TMEM119	chr12	108584851	108603084
TMEM119_chr12_108584851_108603084	0/0	a0011	283	1	0	0	1	0	0	copy fasta	TMEM119	chr12	108584851	108603084
TMEM11_chr17_21192954_21219161	1/1	a0001	192	421	90	78	191	14	46	copy fasta	TMEM11	chr17	21192954	21219161
TMEM11_chr17_21192954_21219161	0/0	a0002	192	1	0	0	1	0	0	copy fasta	TMEM11	chr17	21192954	21219161
TMEM120A_chr7_75981831_75999595	1/1	a0001	343	361	90	73	134	16	46	copy fasta	TMEM120A	chr7	75981831	75999595
TMEM120A_chr7_75981831_75999595	0/0	a0002	343	5	0	0	3	0	2	copy fasta	TMEM120A	chr7	75981831	75999595
TMEM120A_chr7_75981831_75999595	0/0	a0003	343	1	0	0	1	0	0	copy fasta	TMEM120A	chr7	75981831	75999595
TMEM120A_chr7_75981831_75999595	0/0	a0004	343	1	0	1	0	0	0	copy fasta	TMEM120A	chr7	75981831	75999595
TMEM120B_chr12_121707752_121787068	1/1	a0001	339	191	67	29	64	10	19	copy fasta	TMEM120B	chr12	121707752	121787068
TMEM120B_chr12_121707752_121787068	0/0	a0002	339	110	18	28	45	4	15	copy fasta	TMEM120B	chr12	121707752	121787068