JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TMEM120B_chr12_121707752_121787068	0/0	a0003	339	8	7	1	0	0	0	copy fasta	TMEM120B	chr12	121707752	121787068
TMEM120B_chr12_121707752_121787068	0/0	a0004	339	3	0	0	3	0	0	copy fasta	TMEM120B	chr12	121707752	121787068
TMEM120B_chr12_121707752_121787068	0/0	a0005	339	1	1	0	0	0	0	copy fasta	TMEM120B	chr12	121707752	121787068
TMEM120B_chr12_121707752_121787068	0/0	a0006	339	1	1	0	0	0	0	copy fasta	TMEM120B	chr12	121707752	121787068
TMEM121B_chr22_17111297_17126360	1/1	a0001	578	443	87	79	216	14	45	copy fasta	TMEM121B	chr22	17111297	17126360
TMEM121B_chr22_17111297_17126360	0/0	a0002	578	9	9	0	0	0	0	copy fasta	TMEM121B	chr22	17111297	17126360
TMEM121B_chr22_17111297_17126360	0/0	a0003	578	7	0	0	5	2	0	copy fasta	TMEM121B	chr22	17111297	17126360
TMEM121B_chr22_17111297_17126360	0/0	a0004	578	2	0	0	2	0	0	copy fasta	TMEM121B	chr22	17111297	17126360
TMEM121B_chr22_17111297_17126360	0/0	a0005	578	2	2	0	0	0	0	copy fasta	TMEM121B	chr22	17111297	17126360
TMEM121B_chr22_17111297_17126360	0/0	a0006	578	1	0	0	1	0	0	copy fasta	TMEM121B	chr22	17111297	17126360
TMEM121B_chr22_17111297_17126360	0/0	a0007	578	1	0	0	1	0	0	copy fasta	TMEM121B	chr22	17111297	17126360
TMEM121B_chr22_17111297_17126360	0/0	a0008	578	1	0	0	0	0	1	copy fasta	TMEM121B	chr22	17111297	17126360
TMEM121B_chr22_17111297_17126360	0/0	a0009	578	1	0	0	1	0	0	copy fasta	TMEM121B	chr22	17111297	17126360
TMEM121B_chr22_17111297_17126360	0/0	a0010	578	1	0	1	0	0	0	copy fasta	TMEM121B	chr22	17111297	17126360
TMEM121_chr14_105521583_105535198	1/0	a0001	319	195	26	42	77	12	37	copy fasta	TMEM121	chr14	105521583	105535198
TMEM121_chr14_105521583_105535198	0/1	a0002	318	155	68	15	59	4	8	copy fasta	TMEM121	chr14	105521583	105535198
TMEM121_chr14_105521583_105535198	0/0	a0003	319	1	0	1	0	0	0	copy fasta	TMEM121	chr14	105521583	105535198
TMEM121_chr14_105521583_105535198	0/0	a0004	319	1	0	0	0	0	1	copy fasta	TMEM121	chr14	105521583	105535198
TMEM123_chr11_102391332_102457765	1/1	a0001	208	185	80	38	32	9	24	copy fasta	TMEM123	chr11	102391332	102457765
TMEM123_chr11_102391332_102457765	0/0	a0002	208	9	1	5	0	1	2	copy fasta	TMEM123	chr11	102391332	102457765
TMEM123_chr11_102391332_102457765	0/0	a0003	208	5	4	1	0	0	0	copy fasta	TMEM123	chr11	102391332	102457765
TMEM123_chr11_102391332_102457765	0/0	a0004	208	4	1	1	0	0	2	copy fasta	TMEM123	chr11	102391332	102457765
TMEM123_chr11_102391332_102457765	0/0	a0005	208	1	0	1	0	0	0	copy fasta	TMEM123	chr11	102391332	102457765
TMEM125_chr1_43264983_43279002	1/1	a0001	219	434	95	81	194	16	46	copy fasta	TMEM125	chr1	43264983	43279002
TMEM125_chr1_43264983_43279002	0/0	a0002	219	2	2	0	0	0	0	copy fasta	TMEM125	chr1	43264983	43279002
TMEM125_chr1_43264983_43279002	0/0	a0003	219	1	0	1	0	0	0	copy fasta	TMEM125	chr1	43264983	43279002
TMEM125_chr1_43264983_43279002	0/0	a0004	219	1	1	0	0	0	0	copy fasta	TMEM125	chr1	43264983	43279002
TMEM126A_chr11_85642967_85661542	1/1	a0001	195	390	84	69	188	12	35	copy fasta	TMEM126A	chr11	85642967	85661542
TMEM126A_chr11_85642967_85661542	0/0	a0002	195	3	3	0	0	0	0	copy fasta	TMEM126A	chr11	85642967	85661542
TMEM126A_chr11_85642967_85661542	0/0	a0003	195	2	0	1	1	0	0	copy fasta	TMEM126A	chr11	85642967	85661542
TMEM126A_chr11_85642967_85661542	0/0	a0004	54	1	0	0	1	0	0	copy fasta	TMEM126A	chr11	85642967	85661542
TMEM126A_chr11_85642967_85661542	0/0	a0005	140	1	1	0	0	0	0	copy fasta	TMEM126A	chr11	85642967	85661542
TMEM126A_chr11_85642967_85661542	0/0	a0006	195	1	0	0	0	0	1	copy fasta	TMEM126A	chr11	85642967	85661542
TMEM126B_chr11_85623593_85641536	1/1	a0001	230	407	91	67	188	17	42	copy fasta	TMEM126B	chr11	85623593	85641536
TMEM126B_chr11_85623593_85641536	0/0	a0002	230	3	0	1	0	0	2	copy fasta	TMEM126B	chr11	85623593	85641536
TMEM126B_chr11_85623593_85641536	0/0	a0003	230	1	1	0	0	0	0	copy fasta	TMEM126B	chr11	85623593	85641536
TMEM126B_chr11_85623593_85641536	0/0	a0004	230	1	0	1	0	0	0	copy fasta	TMEM126B	chr11	85623593	85641536
TMEM126B_chr11_85623593_85641536	0/0	a0005	230	1	0	1	0	0	0	copy fasta	TMEM126B	chr11	85623593	85641536
TMEM126B_chr11_85623593_85641536	0/0	a0006	230	1	0	0	0	1	0	copy fasta	TMEM126B	chr11	85623593	85641536
TMEM127_chr2_96243514_96270997	1/1	a0001	238	413	92	70	199	10	40	copy fasta	TMEM127	chr2	96243514	96270997
TMEM127_chr2_96243514_96270997	0/0	a0002	238	1	0	0	1	0	0	copy fasta	TMEM127	chr2	96243514	96270997
TMEM128_chr4_4230542_4253223	1/1	a0001	165	392	76	78	183	11	42	copy fasta	TMEM128	chr4	4230542	4253223
TMEM128_chr4_4230542_4253223	0/0	a0002	165	67	18	7	31	5	6	copy fasta	TMEM128	chr4	4230542	4253223
TMEM128_chr4_4230542_4253223	0/0	a0003	165	1	0	1	0	0	0	copy fasta	TMEM128	chr4	4230542	4253223
TMEM129_chr4_1710952_1726323	1/1	a0001	362	359	77	75	153	13	39	copy fasta	TMEM129	chr4	1710952	1726323
TMEM129_chr4_1710952_1726323	0/0	a0002	362	9	8	1	0	0	0	copy fasta	TMEM129	chr4	1710952	1726323
TMEM129_chr4_1710952_1726323	0/0	a0003	362	8	0	1	4	0	3	copy fasta	TMEM129	chr4	1710952	1726323
TMEM129_chr4_1710952_1726323	0/0	a0004	362	4	0	0	0	0	4	copy fasta	TMEM129	chr4	1710952	1726323
TMEM129_chr4_1710952_1726323	0/0	a0005	362	2	2	0	0	0	0	copy fasta	TMEM129	chr4	1710952	1726323
TMEM129_chr4_1710952_1726323	0/0	a0006	362	1	1	0	0	0	0	copy fasta	TMEM129	chr4	1710952	1726323