JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TMEM129_chr4_1710952_1726323	0/0	a0007	362	1	1	0	0	0	0	copy fasta	TMEM129	chr4	1710952	1726323
TMEM129_chr4_1710952_1726323	0/0	a0008	362	1	0	0	1	0	0	copy fasta	TMEM129	chr4	1710952	1726323
TMEM129_chr4_1710952_1726323	0/0	a0009	362	1	0	1	0	0	0	copy fasta	TMEM129	chr4	1710952	1726323
TMEM129_chr4_1710952_1726323	0/0	a0010	362	1	0	0	0	1	0	copy fasta	TMEM129	chr4	1710952	1726323
TMEM129_chr4_1710952_1726323	0/0	a0011	362	1	1	0	0	0	0	copy fasta	TMEM129	chr4	1710952	1726323
TMEM130_chr7_98841490_98875014	1/1	a0001	423	375	94	73	146	16	44	copy fasta	TMEM130	chr7	98841490	98875014
TMEM130_chr7_98841490_98875014	0/0	a0002	423	3	0	2	0	0	1	copy fasta	TMEM130	chr7	98841490	98875014
TMEM130_chr7_98841490_98875014	0/0	a0003	423	1	0	0	0	0	1	copy fasta	TMEM130	chr7	98841490	98875014
TMEM130_chr7_98841490_98875014	0/0	a0004	423	1	0	1	0	0	0	copy fasta	TMEM130	chr7	98841490	98875014
TMEM131L_chr4_153461360_153641711	1/0	a0001	1610	175	66	26	59	4	19	copy fasta	TMEM131L	chr4	153461360	153641711
TMEM131L_chr4_153461360_153641711	0/0	a0002	1610	47	11	10	21	2	3	copy fasta	TMEM131L	chr4	153461360	153641711
TMEM131L_chr4_153461360_153641711	0/0	a0003	1610	6	0	6	0	0	0	copy fasta	TMEM131L	chr4	153461360	153641711
TMEM131L_chr4_153461360_153641711	0/0	a0004	1610	3	3	0	0	0	0	copy fasta	TMEM131L	chr4	153461360	153641711
TMEM131L_chr4_153461360_153641711	0/0	a0005	1610	3	2	1	0	0	0	copy fasta	TMEM131L	chr4	153461360	153641711
TMEM131L_chr4_153461360_153641711	0/0	a0006	1610	2	0	0	2	0	0	copy fasta	TMEM131L	chr4	153461360	153641711
TMEM131L_chr4_153461360_153641711	0/0	a0007	1610	2	2	0	0	0	0	copy fasta	TMEM131L	chr4	153461360	153641711
TMEM131L_chr4_153461360_153641711	0/0	a0008	1610	2	0	2	0	0	0	copy fasta	TMEM131L	chr4	153461360	153641711
TMEM131L_chr4_153461360_153641711	0/1	a0009	1610	2	0	1	0	0	0	copy fasta	TMEM131L	chr4	153461360	153641711
TMEM131L_chr4_153461360_153641711	0/0	a0010	1610	1	0	1	0	0	0	copy fasta	TMEM131L	chr4	153461360	153641711
TMEM131L_chr4_153461360_153641711	0/0	a0011	1610	1	1	0	0	0	0	copy fasta	TMEM131L	chr4	153461360	153641711
TMEM131L_chr4_153461360_153641711	0/0	a0012	1610	1	0	1	0	0	0	copy fasta	TMEM131L	chr4	153461360	153641711
TMEM131L_chr4_153461360_153641711	0/0	a0013	1610	1	1	0	0	0	0	copy fasta	TMEM131L	chr4	153461360	153641711
TMEM131L_chr4_153461360_153641711	0/0	a0014	1610	1	1	0	0	0	0	copy fasta	TMEM131L	chr4	153461360	153641711
TMEM131L_chr4_153461360_153641711	0/0	a0015	1610	1	1	0	0	0	0	copy fasta	TMEM131L	chr4	153461360	153641711
TMEM131_chr2_97751336_98000948	1/1	a0001	1883	206	80	36	69	8	11	copy fasta	TMEM131	chr2	97751336	98000948
TMEM131_chr2_97751336_98000948	0/0	a0002	1883	30	1	15	1	5	8	copy fasta	TMEM131	chr2	97751336	98000948
TMEM131_chr2_97751336_98000948	0/0	a0003	1883	26	0	0	25	0	1	copy fasta	TMEM131	chr2	97751336	98000948
TMEM131_chr2_97751336_98000948	0/0	a0004	1883	6	6	0	0	0	0	copy fasta	TMEM131	chr2	97751336	98000948
TMEM131_chr2_97751336_98000948	0/0	a0005	1883	6	1	4	0	1	0	copy fasta	TMEM131	chr2	97751336	98000948
TMEM131_chr2_97751336_98000948	0/0	a0006	1883	1	1	0	0	0	0	copy fasta	TMEM131	chr2	97751336	98000948
TMEM131_chr2_97751336_98000948	0/0	a0007	1883	1	0	0	0	0	1	copy fasta	TMEM131	chr2	97751336	98000948
TMEM131_chr2_97751336_98000948	0/0	a0008	1883	1	0	1	0	0	0	copy fasta	TMEM131	chr2	97751336	98000948
TMEM131_chr2_97751336_98000948	0/0	a0009	1883	1	0	0	0	0	1	copy fasta	TMEM131	chr2	97751336	98000948
TMEM131_chr2_97751336_98000948	0/0	a0010	1883	1	0	0	1	0	0	copy fasta	TMEM131	chr2	97751336	98000948
TMEM131_chr2_97751336_98000948	0/0	a0011	1883	1	0	0	1	0	0	copy fasta	TMEM131	chr2	97751336	98000948
TMEM131_chr2_97751336_98000948	0/0	a0012	1883	1	1	0	0	0	0	copy fasta	TMEM131	chr2	97751336	98000948
TMEM131_chr2_97751336_98000948	0/0	a0013	1883	1	0	0	1	0	0	copy fasta	TMEM131	chr2	97751336	98000948
TMEM131_chr2_97751336_98000948	0/0	a0014	1883	1	1	0	0	0	0	copy fasta	TMEM131	chr2	97751336	98000948
TMEM131_chr2_97751336_98000948	0/0	a0015	1883	1	1	0	0	0	0	copy fasta	TMEM131	chr2	97751336	98000948
TMEM132A_chr11_60919460_60942159	0/1	a0001	1023	127	26	17	64	4	15	copy fasta	TMEM132A	chr11	60919460	60942159
TMEM132A_chr11_60919460_60942159	0/0	a0002	1023	109	4	13	75	3	14	copy fasta	TMEM132A	chr11	60919460	60942159
TMEM132A_chr11_60919460_60942159	1/0	a0003	1023	86	47	23	5	5	5	copy fasta	TMEM132A	chr11	60919460	60942159
TMEM132A_chr11_60919460_60942159	0/0	a0004	1023	18	11	6	1	0	0	copy fasta	TMEM132A	chr11	60919460	60942159
TMEM132A_chr11_60919460_60942159	0/0	a0005	1023	5	0	3	0	1	1	copy fasta	TMEM132A	chr11	60919460	60942159
TMEM132A_chr11_60919460_60942159	0/0	a0006	1023	4	0	0	4	0	0	copy fasta	TMEM132A	chr11	60919460	60942159
TMEM132A_chr11_60919460_60942159	0/0	a0007	1023	3	0	0	0	3	0	copy fasta	TMEM132A	chr11	60919460	60942159
TMEM132A_chr11_60919460_60942159	0/0	a0008	1023	2	0	2	0	0	0	copy fasta	TMEM132A	chr11	60919460	60942159
TMEM132A_chr11_60919460_60942159	0/0	a0009	1023	1	0	0	1	0	0	copy fasta	TMEM132A	chr11	60919460	60942159
TMEM132A_chr11_60919460_60942159	0/0	a0010	1023	1	1	0	0	0	0	copy fasta	TMEM132A	chr11	60919460	60942159
TMEM132A_chr11_60919460_60942159	0/0	a0011	1023	1	1	0	0	0	0	copy fasta	TMEM132A	chr11	60919460	60942159