JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TMEM132A_chr11_60919460_60942159	0/0	a0012	1023	1	1	0	0	0	0	copy fasta	TMEM132A	chr11	60919460	60942159
TMEM132A_chr11_60919460_60942159	0/0	a0013	1023	1	0	0	1	0	0	copy fasta	TMEM132A	chr11	60919460	60942159
TMEM132A_chr11_60919460_60942159	0/0	a0014	1023	1	1	0	0	0	0	copy fasta	TMEM132A	chr11	60919460	60942159
TMEM132A_chr11_60919460_60942159	0/0	a0015	1023	1	0	0	1	0	0	copy fasta	TMEM132A	chr11	60919460	60942159
TMEM132A_chr11_60919460_60942159	0/0	a0016	1023	1	0	0	0	0	1	copy fasta	TMEM132A	chr11	60919460	60942159
TMEM132B_chr12_125181386_125667369	0/0	a0001	1083	61	13	20	18	0	10	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	a0002	1083	53	30	12	8	0	3	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	a0003	1083	4	4	0	0	0	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	a0004	1083	3	3	0	0	0	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	a0005	1083	3	3	0	0	0	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	a0006	1083	2	1	0	0	0	1	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	a0007	1083	1	0	0	1	0	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132B_chr12_125181386_125667369	0/0	a0008	1083	1	0	0	1	0	0	copy fasta	TMEM132B	chr12	125181386	125667369
TMEM132C_chr12_128262170_128712911	0/0	a0001	1108	20	1	5	7	1	6	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	a0002	1108	18	8	7	2	0	1	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/1	a0003	1108	18	13	2	0	0	2	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	1/0	a0004	1108	15	13	1	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	a0005	1108	14	8	2	3	0	1	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	a0006	1108	12	12	0	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	a0007	1108	12	6	3	1	1	1	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	a0008	1108	12	4	3	3	0	2	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	a0009	1108	9	0	1	2	0	6	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	a0010	1108	6	4	1	0	0	1	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	a0011	1108	5	4	1	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	a0012	1108	3	1	1	0	0	1	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	a0013	1108	3	3	0	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	a0014	1108	2	2	0	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	a0015	1108	2	0	0	2	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	a0016	1108	2	2	0	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	a0017	1108	1	1	0	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	a0018	1108	1	1	0	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	a0019	1108	1	0	1	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	a0020	1108	1	1	0	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	a0021	1108	1	0	0	1	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	a0022	1108	1	0	0	1	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	a0023	1108	1	0	0	1	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	a0024	1108	1	0	0	0	0	1	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	a0025	1108	1	1	0	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	a0026	1108	1	1	0	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	a0027	1108	1	0	0	1	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	a0028	1108	1	0	0	0	0	1	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	a0029	1108	1	1	0	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	a0030	1108	1	1	0	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	a0031	1108	1	0	0	0	0	1	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	a0032	1108	1	1	0	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132C_chr12_128262170_128712911	0/0	a0033	1108	1	1	0	0	0	0	copy fasta	TMEM132C	chr12	128262170	128712911
TMEM132D_chr12_129066726_129909025	1/1	a0001	1099	77	39	12	6	4	14	copy fasta	TMEM132D	chr12	129066726	129909025
TMEM132D_chr12_129066726_129909025	0/0	a0002	1099	8	7	0	0	0	1	copy fasta	TMEM132D	chr12	129066726	129909025
TMEM132D_chr12_129066726_129909025	0/0	a0003	1099	3	0	2	0	0	1	copy fasta	TMEM132D	chr12	129066726	129909025
TMEM132D_chr12_129066726_129909025	0/0	a0004	1099	1	0	0	0	0	1	copy fasta	TMEM132D	chr12	129066726	129909025