JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TMEM144_chr4_158205486_158260416	0/0	a0003	345	2	2	0	0	0	0	copy fasta	TMEM144	chr4	158205486	158260416
TMEM144_chr4_158205486_158260416	0/0	a0004	345	1	0	0	1	0	0	copy fasta	TMEM144	chr4	158205486	158260416
TMEM145_chr19_42308309_42330064	1/1	a0001	493	219	84	53	40	10	30	copy fasta	TMEM145	chr19	42308309	42330064
TMEM145_chr19_42308309_42330064	0/0	a0002	493	1	0	1	0	0	0	copy fasta	TMEM145	chr19	42308309	42330064
TMEM147_chr19_35540626_35552526	1/1	a0001	224	419	93	78	184	14	48	copy fasta	TMEM147	chr19	35540626	35552526
TMEM147_chr19_35540626_35552526	0/0	a0002	224	3	0	0	3	0	0	copy fasta	TMEM147	chr19	35540626	35552526
TMEM147_chr19_35540626_35552526	0/0	a0003	224	1	0	0	1	0	0	copy fasta	TMEM147	chr19	35540626	35552526
TMEM147_chr19_35540626_35552526	0/0	a0004	224	1	1	0	0	0	0	copy fasta	TMEM147	chr19	35540626	35552526
TMEM14A_chr6_52666113_52691588	1/1	a0001	99	425	98	79	192	14	40	copy fasta	TMEM14A	chr6	52666113	52691588
TMEM14A_chr6_52666113_52691588	0/0	a0002	99	1	0	1	0	0	0	copy fasta	TMEM14A	chr6	52666113	52691588
TMEM14B_chr6_10742805_10761981	1/0	a0001	114	439	100	80	198	16	44	copy fasta	TMEM14B	chr6	10742805	10761981
TMEM14B_chr6_10742805_10761981	0/1	a0002	114	1	0	0	0	0	0	copy fasta	TMEM14B	chr6	10742805	10761981
TMEM14C_chr6_10718070_10736127	1/1	a0001	112	435	98	82	193	14	46	copy fasta	TMEM14C	chr6	10718070	10736127
TMEM14C_chr6_10718070_10736127	0/0	a0002	112	2	2	0	0	0	0	copy fasta	TMEM14C	chr6	10718070	10736127
TMEM14C_chr6_10718070_10736127	0/0	a0003	112	1	0	0	1	0	0	copy fasta	TMEM14C	chr6	10718070	10736127
TMEM150A_chr2_85593547_85607698	1/1	a0001	271	384	95	78	159	10	40	copy fasta	TMEM150A	chr2	85593547	85607698
TMEM150A_chr2_85593547_85607698	0/0	a0002	271	1	0	0	1	0	0	copy fasta	TMEM150A	chr2	85593547	85607698
TMEM150A_chr2_85593547_85607698	0/0	a0003	271	1	1	0	0	0	0	copy fasta	TMEM150A	chr2	85593547	85607698
TMEM150B_chr19_55307801_55330341	0/1	a0001	233	206	91	39	47	5	23	copy fasta	TMEM150B	chr19	55307801	55330341
TMEM150B_chr19_55307801_55330341	1/0	a0002	233	145	3	28	91	1	21	copy fasta	TMEM150B	chr19	55307801	55330341
TMEM150B_chr19_55307801_55330341	0/0	a0003	233	1	0	1	0	0	0	copy fasta	TMEM150B	chr19	55307801	55330341
TMEM150C_chr4_82478176_82566988	1/1	a0001	249	254	87	43	76	14	32	copy fasta	TMEM150C	chr4	82478176	82566988
TMEM150C_chr4_82478176_82566988	0/0	a0002	249	1	1	0	0	0	0	copy fasta	TMEM150C	chr4	82478176	82566988
TMEM150C_chr4_82478176_82566988	0/0	a0003	249	1	0	1	0	0	0	copy fasta	TMEM150C	chr4	82478176	82566988
TMEM151A_chr11_66286894_66301664	1/1	a0001	468	448	98	81	208	16	43	copy fasta	TMEM151A	chr11	66286894	66301664
TMEM151A_chr11_66286894_66301664	0/0	a0002	468	1	0	0	0	0	1	copy fasta	TMEM151A	chr11	66286894	66301664
TMEM151A_chr11_66286894_66301664	0/0	a0003	468	1	0	1	0	0	0	copy fasta	TMEM151A	chr11	66286894	66301664
TMEM151B_chr6_44265450_44284444	1/1	a0001	566	401	85	71	183	16	44	copy fasta	TMEM151B	chr6	44265450	44284444
TMEM151B_chr6_44265450_44284444	0/0	a0002	566	3	0	0	3	0	0	copy fasta	TMEM151B	chr6	44265450	44284444
TMEM151B_chr6_44265450_44284444	0/0	a0003	566	1	0	1	0	0	0	copy fasta	TMEM151B	chr6	44265450	44284444
TMEM151B_chr6_44265450_44284444	0/0	a0004	566	1	0	0	1	0	0	copy fasta	TMEM151B	chr6	44265450	44284444
TMEM151B_chr6_44265450_44284444	0/0	a0005	566	1	0	1	0	0	0	copy fasta	TMEM151B	chr6	44265450	44284444
TMEM151B_chr6_44265450_44284444	0/0	a0006	566	1	1	0	0	0	0	copy fasta	TMEM151B	chr6	44265450	44284444
TMEM151B_chr6_44265450_44284444	0/0	a0007	566	1	0	0	1	0	0	copy fasta	TMEM151B	chr6	44265450	44284444
TMEM151B_chr6_44265450_44284444	0/0	a0008	566	1	0	1	0	0	0	copy fasta	TMEM151B	chr6	44265450	44284444
TMEM154_chr4_152613628_152684997	1/1	a0001	183	298	94	50	94	16	42	copy fasta	TMEM154	chr4	152613628	152684997
TMEM154_chr4_152613628_152684997	0/0	a0002	183	1	0	0	1	0	0	copy fasta	TMEM154	chr4	152613628	152684997
TMEM154_chr4_152613628_152684997	0/0	a0003	3	1	0	0	1	0	0	copy fasta	TMEM154	chr4	152613628	152684997
TMEM156_chr4_38961744_39037409	1/1	a0001	296	253	68	55	98	5	25	copy fasta	TMEM156	chr4	38961744	39037409
TMEM156_chr4_38961744_39037409	0/0	a0002	296	112	13	15	64	2	18	copy fasta	TMEM156	chr4	38961744	39037409
TMEM156_chr4_38961744_39037409	0/0	a0003	296	8	0	0	8	0	0	copy fasta	TMEM156	chr4	38961744	39037409
TMEM156_chr4_38961744_39037409	0/0	a0004	296	6	6	0	0	0	0	copy fasta	TMEM156	chr4	38961744	39037409
TMEM156_chr4_38961744_39037409	0/0	a0005	296	4	0	2	0	1	1	copy fasta	TMEM156	chr4	38961744	39037409
TMEM156_chr4_38961744_39037409	0/0	a0006	296	3	3	0	0	0	0	copy fasta	TMEM156	chr4	38961744	39037409
TMEM158_chr3_45219466_45231287	0/1	a0001	300	263	28	57	131	15	31	copy fasta	TMEM158	chr3	45219466	45231287
TMEM158_chr3_45219466_45231287	1/0	a0002	300	145	66	23	41	1	13	copy fasta	TMEM158	chr3	45219466	45231287
TMEM158_chr3_45219466_45231287	0/0	a0003	291	1	1	0	0	0	0	copy fasta	TMEM158	chr3	45219466	45231287
TMEM158_chr3_45219466_45231287	0/0	a0004	300	1	1	0	0	0	0	copy fasta	TMEM158	chr3	45219466	45231287
TMEM160_chr19_47040909_47053624	1/1	a0001	188	430	99	71	197	13	48	copy fasta	TMEM160	chr19	47040909	47053624
TMEM160_chr19_47040909_47053624	0/0	a0002	188	13	1	5	0	5	2	copy fasta	TMEM160	chr19	47040909	47053624