JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TMEM160_chr19_47040909_47053624	0/0	a0003	188	1	0	0	1	0	0	copy fasta	TMEM160	chr19	47040909	47053624
TMEM161A_chr19_19114169_19143478	1/1	a0001	479	321	82	67	124	13	33	copy fasta	TMEM161A	chr19	19114169	19143478
TMEM161A_chr19_19114169_19143478	0/0	a0002	479	24	4	2	10	1	7	copy fasta	TMEM161A	chr19	19114169	19143478
TMEM161A_chr19_19114169_19143478	0/0	a0003	479	2	0	0	2	0	0	copy fasta	TMEM161A	chr19	19114169	19143478
TMEM161A_chr19_19114169_19143478	0/0	a0004	479	2	2	0	0	0	0	copy fasta	TMEM161A	chr19	19114169	19143478
TMEM161A_chr19_19114169_19143478	0/0	a0005	479	1	1	0	0	0	0	copy fasta	TMEM161A	chr19	19114169	19143478
TMEM161A_chr19_19114169_19143478	0/0	a0006	479	1	0	1	0	0	0	copy fasta	TMEM161A	chr19	19114169	19143478
TMEM161A_chr19_19114169_19143478	0/0	a0007	479	1	1	0	0	0	0	copy fasta	TMEM161A	chr19	19114169	19143478
TMEM161B_chr5_88190047_88273845	1/1	a0001	487	240	78	53	68	12	27	copy fasta	TMEM161B	chr5	88190047	88273845
TMEM161B_chr5_88190047_88273845	0/0	a0002	487	41	0	1	38	0	2	copy fasta	TMEM161B	chr5	88190047	88273845
TMEM161B_chr5_88190047_88273845	0/0	a0003	487	1	0	0	0	0	1	copy fasta	TMEM161B	chr5	88190047	88273845
TMEM163_chr2_134450759_134724000	1/1	a0001	289	222	76	46	66	6	26	copy fasta	TMEM163	chr2	134450759	134724000
TMEM164_chrX_109998114_110182788	1/1	a0001	297	196	58	39	73	5	19	copy fasta	TMEM164	chrX	109998114	110182788
TMEM164_chrX_109998114_110182788	0/0	a0002	297	1	0	0	0	0	1	copy fasta	TMEM164	chrX	109998114	110182788
TMEM164_chrX_109998114_110182788	0/0	a0003	232	1	0	0	1	0	0	copy fasta	TMEM164	chrX	109998114	110182788
TMEM165_chr4_55390957_55431175	1/1	a0001	324	380	93	72	158	15	40	copy fasta	TMEM165	chr4	55390957	55431175
TMEM165_chr4_55390957_55431175	0/0	a0002	324	1	0	0	0	1	0	copy fasta	TMEM165	chr4	55390957	55431175
TMEM165_chr4_55390957_55431175	0/0	a0003	324	1	1	0	0	0	0	copy fasta	TMEM165	chr4	55390957	55431175
TMEM167A_chr5_83047846_83082394	1/1	a0001	72	363	92	62	154	16	37	copy fasta	TMEM167A	chr5	83047846	83082394
TMEM167A_chr5_83047846_83082394	0/0	a0002	72	1	0	0	0	0	1	copy fasta	TMEM167A	chr5	83047846	83082394
TMEM167B_chr1_109085764_109101934	1/1	a0001	74	396	96	74	168	18	38	copy fasta	TMEM167B	chr1	109085764	109101934
TMEM168_chr7_112757377_112795393	1/1	a0001	697	256	84	54	70	10	36	copy fasta	TMEM168	chr7	112757377	112795393
TMEM168_chr7_112757377_112795393	0/0	a0002	697	11	0	0	11	0	0	copy fasta	TMEM168	chr7	112757377	112795393
TMEM168_chr7_112757377_112795393	0/0	a0003	697	2	0	1	1	0	0	copy fasta	TMEM168	chr7	112757377	112795393
TMEM168_chr7_112757377_112795393	0/0	a0004	697	2	0	0	2	0	0	copy fasta	TMEM168	chr7	112757377	112795393
TMEM168_chr7_112757377_112795393	0/0	a0005	697	1	0	0	1	0	0	copy fasta	TMEM168	chr7	112757377	112795393
TMEM168_chr7_112757377_112795393	0/0	a0006	312	1	0	1	0	0	0	copy fasta	TMEM168	chr7	112757377	112795393
TMEM168_chr7_112757377_112795393	0/0	a0007	697	1	0	0	1	0	0	copy fasta	TMEM168	chr7	112757377	112795393
TMEM169_chr2_216076919_216107783	1/1	a0001	297	399	95	78	163	15	46	copy fasta	TMEM169	chr2	216076919	216107783
TMEM169_chr2_216076919_216107783	0/0	a0002	297	5	5	0	0	0	0	copy fasta	TMEM169	chr2	216076919	216107783
TMEM169_chr2_216076919_216107783	0/0	a0003	297	1	0	0	1	0	0	copy fasta	TMEM169	chr2	216076919	216107783
TMEM169_chr2_216076919_216107783	0/0	a0004	297	1	0	0	1	0	0	copy fasta	TMEM169	chr2	216076919	216107783
TMEM169_chr2_216076919_216107783	0/0	a0005	297	1	0	0	0	1	0	copy fasta	TMEM169	chr2	216076919	216107783
TMEM169_chr2_216076919_216107783	0/0	a0006	297	1	0	0	1	0	0	copy fasta	TMEM169	chr2	216076919	216107783
TMEM170A_chr16_75438054_75469689	1/0	a0001	144	359	90	64	150	18	36	copy fasta	TMEM170A	chr16	75438054	75469689
TMEM170A_chr16_75438054_75469689	0/0	a0002	144	1	1	0	0	0	0	copy fasta	TMEM170A	chr16	75438054	75469689
TMEM170A_chr16_75438054_75469689	0/0	a0003	144	1	1	0	0	0	0	copy fasta	TMEM170A	chr16	75438054	75469689
TMEM170B_chr6_11532749_11588524	1/1	a0001	132	351	88	48	165	14	34	copy fasta	TMEM170B	chr6	11532749	11588524
TMEM170B_chr6_11532749_11588524	0/0	a0002	132	1	0	0	1	0	0	copy fasta	TMEM170B	chr6	11532749	11588524
TMEM171_chr5_73115575_73136809	0/1	a0001	324	215	46	28	119	2	19	copy fasta	TMEM171	chr5	73115575	73136809
TMEM171_chr5_73115575_73136809	1/0	a0002	324	163	41	30	66	4	21	copy fasta	TMEM171	chr5	73115575	73136809
TMEM171_chr5_73115575_73136809	0/0	a0003	324	57	8	19	20	5	5	copy fasta	TMEM171	chr5	73115575	73136809
TMEM171_chr5_73115575_73136809	0/0	a0004	324	2	0	1	0	0	1	copy fasta	TMEM171	chr5	73115575	73136809
TMEM171_chr5_73115575_73136809	0/0	a0005	324	2	0	0	0	1	1	copy fasta	TMEM171	chr5	73115575	73136809
TMEM171_chr5_73115575_73136809	0/0	a0006	324	2	0	0	0	2	0	copy fasta	TMEM171	chr5	73115575	73136809
TMEM171_chr5_73115575_73136809	0/0	a0007	324	1	0	1	0	0	0	copy fasta	TMEM171	chr5	73115575	73136809
TMEM171_chr5_73115575_73136809	0/0	a0008	324	1	0	0	1	0	0	copy fasta	TMEM171	chr5	73115575	73136809
TMEM171_chr5_73115575_73136809	0/0	a0009	324	1	0	0	1	0	0	copy fasta	TMEM171	chr5	73115575	73136809
TMEM171_chr5_73115575_73136809	0/0	a0010	324	1	0	0	1	0	0	copy fasta	TMEM171	chr5	73115575	73136809
TMEM171_chr5_73115575_73136809	0/0	a0011	324	1	1	0	0	0	0	copy fasta	TMEM171	chr5	73115575	73136809