JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TMEM171_chr5_73115575_73136809	0/0	a0012	324	1	1	0	0	0	0	copy fasta	TMEM171	chr5	73115575	73136809
TMEM171_chr5_73115575_73136809	0/0	a0013	324	1	1	0	0	0	0	copy fasta	TMEM171	chr5	73115575	73136809
TMEM171_chr5_73115575_73136809	0/0	a0014	324	1	0	0	0	0	1	copy fasta	TMEM171	chr5	73115575	73136809
TMEM171_chr5_73115575_73136809	0/0	a0015	324	1	0	1	0	0	0	copy fasta	TMEM171	chr5	73115575	73136809
TMEM174_chr5_73168193_73180143	1/1	a0001	243	426	87	79	202	14	42	copy fasta	TMEM174	chr5	73168193	73180143
TMEM174_chr5_73168193_73180143	0/0	a0002	243	3	3	0	0	0	0	copy fasta	TMEM174	chr5	73168193	73180143
TMEM174_chr5_73168193_73180143	0/0	a0003	243	1	1	0	0	0	0	copy fasta	TMEM174	chr5	73168193	73180143
TMEM174_chr5_73168193_73180143	0/0	a0004	243	1	1	0	0	0	0	copy fasta	TMEM174	chr5	73168193	73180143
TMEM174_chr5_73168193_73180143	0/0	a0005	243	1	0	1	0	0	0	copy fasta	TMEM174	chr5	73168193	73180143
TMEM175_chr4_927460_963656	1/1	a0001	504	292	80	51	129	9	21	copy fasta	TMEM175	chr4	927460	963656
TMEM175_chr4_927460_963656	0/0	a0002	504	46	2	3	24	2	15	copy fasta	TMEM175	chr4	927460	963656
TMEM175_chr4_927460_963656	0/0	a0003	504	14	0	2	11	0	1	copy fasta	TMEM175	chr4	927460	963656
TMEM175_chr4_927460_963656	0/0	a0004	504	6	0	5	0	0	1	copy fasta	TMEM175	chr4	927460	963656
TMEM175_chr4_927460_963656	0/0	a0005	504	2	2	0	0	0	0	copy fasta	TMEM175	chr4	927460	963656
TMEM175_chr4_927460_963656	0/0	a0006	504	2	1	1	0	0	0	copy fasta	TMEM175	chr4	927460	963656
TMEM175_chr4_927460_963656	0/0	a0007	504	1	0	1	0	0	0	copy fasta	TMEM175	chr4	927460	963656
TMEM175_chr4_927460_963656	0/0	a0008	504	1	0	1	0	0	0	copy fasta	TMEM175	chr4	927460	963656
TMEM175_chr4_927460_963656	0/0	a0009	504	1	1	0	0	0	0	copy fasta	TMEM175	chr4	927460	963656
TMEM175_chr4_927460_963656	0/0	a0010	504	1	0	0	0	1	0	copy fasta	TMEM175	chr4	927460	963656
TMEM175_chr4_927460_963656	0/0	a0011	504	1	1	0	0	0	0	copy fasta	TMEM175	chr4	927460	963656
TMEM175_chr4_927460_963656	0/0	a0012	504	1	1	0	0	0	0	copy fasta	TMEM175	chr4	927460	963656
TMEM175_chr4_927460_963656	0/0	a0013	504	1	0	0	1	0	0	copy fasta	TMEM175	chr4	927460	963656
TMEM175_chr4_927460_963656	0/0	a0014	504	1	1	0	0	0	0	copy fasta	TMEM175	chr4	927460	963656
TMEM175_chr4_927460_963656	0/0	a0015	504	1	0	0	1	0	0	copy fasta	TMEM175	chr4	927460	963656
TMEM175_chr4_927460_963656	0/0	a0016	504	1	1	0	0	0	0	copy fasta	TMEM175	chr4	927460	963656
TMEM176A_chr7_150795769_150810118	0/1	a0001	235	246	41	34	132	8	30	copy fasta	TMEM176A	chr7	150795769	150810118
TMEM176A_chr7_150795769_150810118	0/0	a0002	235	73	17	24	25	2	5	copy fasta	TMEM176A	chr7	150795769	150810118
TMEM176A_chr7_150795769_150810118	0/0	a0003	235	41	18	11	4	4	4	copy fasta	TMEM176A	chr7	150795769	150810118
TMEM176A_chr7_150795769_150810118	1/0	a0004	235	40	2	13	17	2	5	copy fasta	TMEM176A	chr7	150795769	150810118
TMEM176A_chr7_150795769_150810118	0/0	a0005	235	20	13	1	6	0	0	copy fasta	TMEM176A	chr7	150795769	150810118
TMEM176A_chr7_150795769_150810118	0/0	a0006	235	4	3	1	0	0	0	copy fasta	TMEM176A	chr7	150795769	150810118
TMEM176A_chr7_150795769_150810118	0/0	a0007	235	3	1	2	0	0	0	copy fasta	TMEM176A	chr7	150795769	150810118
TMEM176A_chr7_150795769_150810118	0/0	a0008	235	1	0	0	1	0	0	copy fasta	TMEM176A	chr7	150795769	150810118
TMEM176A_chr7_150795769_150810118	0/0	a0009	235	1	0	0	0	0	1	copy fasta	TMEM176A	chr7	150795769	150810118
TMEM176A_chr7_150795769_150810118	0/0	a0010	235	1	0	0	0	0	1	copy fasta	TMEM176A	chr7	150795769	150810118
TMEM176A_chr7_150795769_150810118	0/0	a0011	235	1	1	0	0	0	0	copy fasta	TMEM176A	chr7	150795769	150810118
TMEM176A_chr7_150795769_150810118	0/0	a0012	235	1	0	0	1	0	0	copy fasta	TMEM176A	chr7	150795769	150810118
TMEM176B_chr7_150786301_150805364	0/1	a0001	270	201	25	23	123	8	21	copy fasta	TMEM176B	chr7	150786301	150805364
TMEM176B_chr7_150786301_150805364	1/0	a0002	270	185	39	45	78	6	16	copy fasta	TMEM176B	chr7	150786301	150805364
TMEM176B_chr7_150786301_150805364	0/0	a0003	270	51	13	7	24	1	6	copy fasta	TMEM176B	chr7	150786301	150805364
TMEM176B_chr7_150786301_150805364	0/0	a0004	270	13	10	2	0	0	1	copy fasta	TMEM176B	chr7	150786301	150805364
TMEM176B_chr7_150786301_150805364	0/0	a0005	270	6	0	6	0	0	0	copy fasta	TMEM176B	chr7	150786301	150805364
TMEM176B_chr7_150786301_150805364	0/0	a0006	270	5	1	0	4	0	0	copy fasta	TMEM176B	chr7	150786301	150805364
TMEM176B_chr7_150786301_150805364	0/0	a0007	270	4	0	3	0	0	1	copy fasta	TMEM176B	chr7	150786301	150805364
TMEM176B_chr7_150786301_150805364	0/0	a0008	270	3	3	0	0	0	0	copy fasta	TMEM176B	chr7	150786301	150805364
TMEM176B_chr7_150786301_150805364	0/0	a0009	270	2	2	0	0	0	0	copy fasta	TMEM176B	chr7	150786301	150805364
TMEM176B_chr7_150786301_150805364	0/0	a0010	270	1	1	0	0	0	0	copy fasta	TMEM176B	chr7	150786301	150805364
TMEM176B_chr7_150786301_150805364	0/0	a0011	270	1	1	0	0	0	0	copy fasta	TMEM176B	chr7	150786301	150805364
TMEM176B_chr7_150786301_150805364	0/0	a0012	62	1	0	0	0	1	0	copy fasta	TMEM176B	chr7	150786301	150805364
TMEM176B_chr7_150786301_150805364	0/0	a0013	270	1	1	0	0	0	0	copy fasta	TMEM176B	chr7	150786301	150805364