JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TMEM176B_chr7_150786301_150805364	0/0	a0014	270	1	0	0	1	0	0	copy fasta	TMEM176B	chr7	150786301	150805364
TMEM176B_chr7_150786301_150805364	0/0	a0015	270	1	0	0	0	0	1	copy fasta	TMEM176B	chr7	150786301	150805364
TMEM177_chr2_119674201_119687118	0/1	a0001	311	276	52	61	114	9	39	copy fasta	TMEM177	chr2	119674201	119687118
TMEM177_chr2_119674201_119687118	0/0	a0002	311	55	14	8	27	1	5	copy fasta	TMEM177	chr2	119674201	119687118
TMEM177_chr2_119674201_119687118	1/0	a0003	311	36	26	2	7	0	0	copy fasta	TMEM177	chr2	119674201	119687118
TMEM177_chr2_119674201_119687118	0/0	a0004	311	1	1	0	0	0	0	copy fasta	TMEM177	chr2	119674201	119687118
TMEM177_chr2_119674201_119687118	0/0	a0005	311	1	1	0	0	0	0	copy fasta	TMEM177	chr2	119674201	119687118
TMEM177_chr2_119674201_119687118	0/0	a0006	311	1	0	0	0	0	1	copy fasta	TMEM177	chr2	119674201	119687118
TMEM177_chr2_119674201_119687118	0/0	a0007	311	1	0	0	0	0	1	copy fasta	TMEM177	chr2	119674201	119687118
TMEM177_chr2_119674201_119687118	0/0	a0008	311	1	0	0	1	0	0	copy fasta	TMEM177	chr2	119674201	119687118
TMEM177_chr2_119674201_119687118	0/0	a0009	311	1	0	1	0	0	0	copy fasta	TMEM177	chr2	119674201	119687118
TMEM177_chr2_119674201_119687118	0/0	a0010	311	1	0	0	1	0	0	copy fasta	TMEM177	chr2	119674201	119687118
TMEM177_chr2_119674201_119687118	0/0	a0011	311	1	0	0	1	0	0	copy fasta	TMEM177	chr2	119674201	119687118
TMEM177_chr2_119674201_119687118	0/0	a0012	311	1	0	0	1	0	0	copy fasta	TMEM177	chr2	119674201	119687118
TMEM178A_chr2_39660917_39722963	1/1	a0001	297	295	88	60	108	6	31	copy fasta	TMEM178A	chr2	39660917	39722963
TMEM178A_chr2_39660917_39722963	0/0	a0002	297	1	0	0	0	0	1	copy fasta	TMEM178A	chr2	39660917	39722963
TMEM178B_chr7_141069064_141485380	0/0	a0001	294	79	51	14	8	0	6	copy fasta	TMEM178B	chr7	141069064	141485380
TMEM178B_chr7_141069064_141485380	0/0	a0002	294	1	1	0	0	0	0	copy fasta	TMEM178B	chr7	141069064	141485380
TMEM179B_chr11_62782402_62795400	1/1	a0001	219	398	92	72	178	18	36	copy fasta	TMEM179B	chr11	62782402	62795400
TMEM179_chr14_104585864_104609772	0/1	a0001	233	406	97	74	180	14	40	copy fasta	TMEM179	chr14	104585864	104609772
TMEM179_chr14_104585864_104609772	0/0	a0002	233	1	1	0	0	0	0	copy fasta	TMEM179	chr14	104585864	104609772
TMEM17_chr2_62495218_62511195	1/1	a0001	198	356	73	71	159	14	37	copy fasta	TMEM17	chr2	62495218	62511195
TMEM17_chr2_62495218_62511195	0/0	a0002	198	91	6	11	66	2	6	copy fasta	TMEM17	chr2	62495218	62511195
TMEM17_chr2_62495218_62511195	0/0	a0003	198	13	13	0	0	0	0	copy fasta	TMEM17	chr2	62495218	62511195
TMEM17_chr2_62495218_62511195	0/0	a0004	198	8	0	3	0	2	3	copy fasta	TMEM17	chr2	62495218	62511195
TMEM17_chr2_62495218_62511195	0/0	a0005	198	3	2	1	0	0	0	copy fasta	TMEM17	chr2	62495218	62511195
TMEM17_chr2_62495218_62511195	0/0	a0006	198	2	0	0	2	0	0	copy fasta	TMEM17	chr2	62495218	62511195
TMEM17_chr2_62495218_62511195	0/0	a0007	198	2	0	0	2	0	0	copy fasta	TMEM17	chr2	62495218	62511195
TMEM17_chr2_62495218_62511195	0/0	a0008	198	1	0	0	1	0	0	copy fasta	TMEM17	chr2	62495218	62511195
TMEM181_chr6_158555091_158640429	1/1	a0001	475	328	86	73	117	12	38	copy fasta	TMEM181	chr6	158555091	158640429
TMEM181_chr6_158555091_158640429	0/0	a0002	475	2	0	2	0	0	0	copy fasta	TMEM181	chr6	158555091	158640429
TMEM181_chr6_158555091_158640429	0/0	a0003	475	1	0	0	1	0	0	copy fasta	TMEM181	chr6	158555091	158640429
TMEM181_chr6_158555091_158640429	0/0	a0004	475	1	1	0	0	0	0	copy fasta	TMEM181	chr6	158555091	158640429
TMEM181_chr6_158555091_158640429	0/0	a0005	475	1	0	1	0	0	0	copy fasta	TMEM181	chr6	158555091	158640429
TMEM181_chr6_158555091_158640429	0/0	a0006	475	1	1	0	0	0	0	copy fasta	TMEM181	chr6	158555091	158640429
TMEM182_chr2_102757031_102822679	0/1	a0001	229	354	86	66	146	16	39	copy fasta	TMEM182	chr2	102757031	102822679
TMEM182_chr2_102757031_102822679	1/0	a0002	229	2	0	0	0	0	1	copy fasta	TMEM182	chr2	102757031	102822679
TMEM183A_chr1_203002374_203029848	1/1	a0001	376	349	91	56	141	15	44	copy fasta	TMEM183A	chr1	203002374	203029848
TMEM183A_chr1_203002374_203029848	0/0	a0002	376	76	5	17	49	3	2	copy fasta	TMEM183A	chr1	203002374	203029848
TMEM183A_chr1_203002374_203029848	0/0	a0003	376	2	2	0	0	0	0	copy fasta	TMEM183A	chr1	203002374	203029848
TMEM183A_chr1_203002374_203029848	0/0	a0004	376	1	0	1	0	0	0	copy fasta	TMEM183A	chr1	203002374	203029848
TMEM184A_chr7_1537235_1561205	0/0	a0001	414	176	40	27	89	10	10	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	1/1	a0002	413	148	35	29	54	3	25	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	a0003	414	57	15	9	22	0	11	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	a0004	413	22	1	10	10	1	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	a0005	414	6	0	0	6	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	a0006	414	2	0	0	0	2	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	a0007	414	2	0	0	2	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	a0008	413	1	1	0	0	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	a0009	413	1	0	1	0	0	0	copy fasta	TMEM184A	chr7	1537235	1561205