JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TMEM184A_chr7_1537235_1561205	0/0	a0010	413	1	1	0	0	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	a0011	413	1	1	0	0	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	a0012	414	1	0	0	1	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	a0013	413	1	1	0	0	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184A_chr7_1537235_1561205	0/0	a0014	413	1	1	0	0	0	0	copy fasta	TMEM184A	chr7	1537235	1561205
TMEM184B_chr22_38214291_38278010	1/1	a0001	407	353	90	64	143	14	40	copy fasta	TMEM184B	chr22	38214291	38278010
TMEM184B_chr22_38214291_38278010	0/0	a0002	407	1	0	0	1	0	0	copy fasta	TMEM184B	chr22	38214291	38278010
TMEM184C_chr4_147612397_147641721	1/1	a0001	438	335	94	64	133	12	30	copy fasta	TMEM184C	chr4	147612397	147641721
TMEM184C_chr4_147612397_147641721	0/0	a0002	438	1	0	0	1	0	0	copy fasta	TMEM184C	chr4	147612397	147641721
TMEM185A_chrX_149591556_149636792	1/1	a0001	350	254	69	39	113	9	22	copy fasta	TMEM185A	chrX	149591556	149636792
TMEM185A_chrX_149591556_149636792	0/0	a0002	350	4	3	1	0	0	0	copy fasta	TMEM185A	chrX	149591556	149636792
TMEM185A_chrX_149591556_149636792	0/0	a0003	157	1	0	0	1	0	0	copy fasta	TMEM185A	chrX	149591556	149636792
TMEM185B_chr2_120212479_120228400	0/1	a0001	350	231	29	45	117	11	28	copy fasta	TMEM185B	chr2	120212479	120228400
TMEM185B_chr2_120212479_120228400	1/0	a0002	350	193	67	29	73	7	16	copy fasta	TMEM185B	chr2	120212479	120228400
TMEM186_chr16_8790180_8802639	1/1	a0001	213	453	98	84	210	14	45	copy fasta	TMEM186	chr16	8790180	8802639
TMEM186_chr16_8790180_8802639	0/0	a0002	213	1	0	0	0	0	1	copy fasta	TMEM186	chr16	8790180	8802639
TMEM186_chr16_8790180_8802639	0/0	a0003	213	1	0	0	1	0	0	copy fasta	TMEM186	chr16	8790180	8802639
TMEM186_chr16_8790180_8802639	0/0	a0004	213	1	0	0	1	0	0	copy fasta	TMEM186	chr16	8790180	8802639
TMEM187_chrX_153967754_153988194	0/0	a0001	261	125	11	18	86	0	10	copy fasta	TMEM187	chrX	153967754	153988194
TMEM187_chrX_153967754_153988194	1/1	a0002	261	106	20	21	40	9	14	copy fasta	TMEM187	chrX	153967754	153988194
TMEM187_chrX_153967754_153988194	0/0	a0003	261	42	39	3	0	0	0	copy fasta	TMEM187	chrX	153967754	153988194
TMEM187_chrX_153967754_153988194	0/0	a0004	261	7	6	1	0	0	0	copy fasta	TMEM187	chrX	153967754	153988194
TMEM187_chrX_153967754_153988194	0/0	a0005	261	1	0	1	0	0	0	copy fasta	TMEM187	chrX	153967754	153988194
TMEM18_chr2_658877_682406	1/1	a0001	140	442	100	84	188	18	50	copy fasta	TMEM18	chr2	658877	682406
TMEM190_chr19_55371826_55383246	1/1	a0001	177	331	91	61	118	14	45	copy fasta	TMEM190	chr19	55371826	55383246
TMEM190_chr19_55371826_55383246	0/0	a0002	177	3	3	0	0	0	0	copy fasta	TMEM190	chr19	55371826	55383246
TMEM190_chr19_55371826_55383246	0/0	a0003	177	1	0	1	0	0	0	copy fasta	TMEM190	chr19	55371826	55383246
TMEM190_chr19_55371826_55383246	0/0	a0004	177	1	0	0	0	0	1	copy fasta	TMEM190	chr19	55371826	55383246
TMEM191B_chr22_18522802_18535573	0/0	a0001	347	23	7	5	10	0	1	copy fasta	TMEM191B	chr22	18522802	18535573
TMEM191B_chr22_18522802_18535573	1/0	a0002	346	4	1	1	0	0	1	copy fasta	TMEM191B	chr22	18522802	18535573
TMEM191B_chr22_18522802_18535573	0/0	a0003	347	2	2	0	0	0	0	copy fasta	TMEM191B	chr22	18522802	18535573
TMEM191C_chr22_21462387_21474935	0/1	a0001	302	381	93	68	169	18	32	copy fasta	TMEM191C	chr22	21462387	21474935
TMEM191C_chr22_21462387_21474935	1/0	a0002	302	26	0	0	15	0	10	copy fasta	TMEM191C	chr22	21462387	21474935
TMEM191C_chr22_21462387_21474935	0/0	a0003	302	4	0	0	4	0	0	copy fasta	TMEM191C	chr22	21462387	21474935
TMEM191C_chr22_21462387_21474935	0/0	a0004	237	2	0	2	0	0	0	copy fasta	TMEM191C	chr22	21462387	21474935
TMEM191C_chr22_21462387_21474935	0/0	a0005	302	2	2	0	0	0	0	copy fasta	TMEM191C	chr22	21462387	21474935
TMEM191C_chr22_21462387_21474935	0/0	a0006	302	1	0	0	1	0	0	copy fasta	TMEM191C	chr22	21462387	21474935
TMEM191C_chr22_21462387_21474935	0/0	a0007	302	1	0	0	1	0	0	copy fasta	TMEM191C	chr22	21462387	21474935
TMEM191C_chr22_21462387_21474935	0/0	a0008	302	1	0	0	1	0	0	copy fasta	TMEM191C	chr22	21462387	21474935
TMEM191C_chr22_21462387_21474935	0/0	a0009	302	1	0	0	1	0	0	copy fasta	TMEM191C	chr22	21462387	21474935
TMEM191C_chr22_21462387_21474935	0/0	a0010	302	1	1	0	0	0	0	copy fasta	TMEM191C	chr22	21462387	21474935
TMEM192_chr4_165065608_165117860	1/1	a0001	271	330	92	58	130	12	36	copy fasta	TMEM192	chr4	165065608	165117860
TMEM196_chr7_19714315_19778617	1/1	a0001	179	347	83	66	146	12	38	copy fasta	TMEM196	chr7	19714315	19778617
TMEM196_chr7_19714315_19778617	0/0	a0002	179	1	1	0	0	0	0	copy fasta	TMEM196	chr7	19714315	19778617
TMEM198_chr2_219539028_219555595	1/1	a0001	360	392	87	76	169	14	44	copy fasta	TMEM198	chr2	219539028	219555595
TMEM198_chr2_219539028_219555595	0/0	a0002	360	4	4	0	0	0	0	copy fasta	TMEM198	chr2	219539028	219555595
TMEM198_chr2_219539028_219555595	0/0	a0003	360	2	0	0	2	0	0	copy fasta	TMEM198	chr2	219539028	219555595
TMEM198_chr2_219539028_219555595	0/0	a0004	360	1	0	1	0	0	0	copy fasta	TMEM198	chr2	219539028	219555595
TMEM198_chr2_219539028_219555595	0/0	a0005	360	1	0	0	0	0	1	copy fasta	TMEM198	chr2	219539028	219555595
TMEM198_chr2_219539028_219555595	0/0	a0006	360	1	0	0	1	0	0	copy fasta	TMEM198	chr2	219539028	219555595