JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
BIRC7_chr20_63230905_63245495	0/0	a0005	298	7	6	0	1	0	0	copy fasta	BIRC7	chr20	63230905	63245495
BIRC7_chr20_63230905_63245495	0/0	a0006	298	6	6	0	0	0	0	copy fasta	BIRC7	chr20	63230905	63245495
BIRC7_chr20_63230905_63245495	0/0	a0007	298	1	1	0	0	0	0	copy fasta	BIRC7	chr20	63230905	63245495
BIRC7_chr20_63230905_63245495	0/0	a0008	40	1	0	0	1	0	0	copy fasta	BIRC7	chr20	63230905	63245495
BIRC7_chr20_63230905_63245495	0/0	a0009	298	1	0	1	0	0	0	copy fasta	BIRC7	chr20	63230905	63245495
BIRC7_chr20_63230905_63245495	0/0	a0010	298	1	0	0	0	0	1	copy fasta	BIRC7	chr20	63230905	63245495
BIVM_chr13_102794119_102846533	1/1	a0001	503	403	90	77	182	14	38	copy fasta	BIVM	chr13	102794119	102846533
BIVM_chr13_102794119_102846533	0/0	a0002	503	1	0	1	0	0	0	copy fasta	BIVM	chr13	102794119	102846533
BLACAT1_chr1_205429886_205461045	0/0	a0000	0	1	0	0	1	0	0	copy fasta	BLACAT1	chr1	205429886	205461045
BLACAT1_chr1_205429886_205461045	1/1	a0001	33	383	89	79	151	16	46	copy fasta	BLACAT1	chr1	205429886	205461045
BLACAT1_chr1_205429886_205461045	0/0	a0002	33	8	8	0	0	0	0	copy fasta	BLACAT1	chr1	205429886	205461045
BLACAT1_chr1_205429886_205461045	0/0	a0003	33	1	0	1	0	0	0	copy fasta	BLACAT1	chr1	205429886	205461045
BLACAT1_chr1_205429886_205461045	0/0	a0004	33	1	1	0	0	0	0	copy fasta	BLACAT1	chr1	205429886	205461045
BLCAP_chr20_37512417_37532876	1/1	a0001	87	404	98	80	176	10	38	copy fasta	BLCAP	chr20	37512417	37532876
BLID_chr11_122110340_122121215	1/1	a0001	108	428	92	70	202	16	46	copy fasta	BLID	chr11	122110340	122121215
BLID_chr11_122110340_122121215	0/0	a0002	108	6	6	0	0	0	0	copy fasta	BLID	chr11	122110340	122121215
BLK_chr8_11489387_11569599	1/1	a0001	505	295	85	59	94	11	44	copy fasta	BLK	chr8	11489387	11569599
BLK_chr8_11489387_11569599	0/0	a0002	505	5	5	0	0	0	0	copy fasta	BLK	chr8	11489387	11569599
BLK_chr8_11489387_11569599	0/0	a0003	505	4	0	1	0	1	2	copy fasta	BLK	chr8	11489387	11569599
BLK_chr8_11489387_11569599	0/0	a0004	505	3	3	0	0	0	0	copy fasta	BLK	chr8	11489387	11569599
BLK_chr8_11489387_11569599	0/0	a0005	505	1	1	0	0	0	0	copy fasta	BLK	chr8	11489387	11569599
BLMH_chr17_30243203_30296944	1/0	a0001	455	198	70	45	55	7	20	copy fasta	BLMH	chr17	30243203	30296944
BLMH_chr17_30243203_30296944	0/1	a0002	455	96	17	27	34	5	12	copy fasta	BLMH	chr17	30243203	30296944
BLMH_chr17_30243203_30296944	0/0	a0003	455	1	0	0	1	0	0	copy fasta	BLMH	chr17	30243203	30296944
BLMH_chr17_30243203_30296944	0/0	a0004	455	1	1	0	0	0	0	copy fasta	BLMH	chr17	30243203	30296944
BLMH_chr17_30243203_30296944	0/0	a0005	455	1	1	0	0	0	0	copy fasta	BLMH	chr17	30243203	30296944
BLMH_chr17_30243203_30296944	0/0	a0006	455	1	1	0	0	0	0	copy fasta	BLMH	chr17	30243203	30296944
BLM_chr15_90712346_90821166	1/1	a0001	1417	228	73	30	91	7	25	copy fasta	BLM	chr15	90712346	90821166
BLM_chr15_90712346_90821166	0/0	a0002	1417	14	0	2	12	0	0	copy fasta	BLM	chr15	90712346	90821166
BLM_chr15_90712346_90821166	0/0	a0003	1417	12	2	2	0	4	4	copy fasta	BLM	chr15	90712346	90821166
BLM_chr15_90712346_90821166	0/0	a0004	1417	12	4	2	4	1	1	copy fasta	BLM	chr15	90712346	90821166
BLM_chr15_90712346_90821166	0/0	a0005	1417	6	6	0	0	0	0	copy fasta	BLM	chr15	90712346	90821166
BLM_chr15_90712346_90821166	0/0	a0006	1417	2	2	0	0	0	0	copy fasta	BLM	chr15	90712346	90821166
BLM_chr15_90712346_90821166	0/0	a0007	1417	1	0	0	1	0	0	copy fasta	BLM	chr15	90712346	90821166
BLM_chr15_90712346_90821166	0/0	a0008	1417	1	1	0	0	0	0	copy fasta	BLM	chr15	90712346	90821166
BLM_chr15_90712346_90821166	0/0	a0009	1417	1	0	1	0	0	0	copy fasta	BLM	chr15	90712346	90821166
BLM_chr15_90712346_90821166	0/0	a0010	1417	1	1	0	0	0	0	copy fasta	BLM	chr15	90712346	90821166
BLM_chr15_90712346_90821166	0/0	a0011	1417	1	1	0	0	0	0	copy fasta	BLM	chr15	90712346	90821166
BLM_chr15_90712346_90821166	0/0	a0012	1417	1	0	1	0	0	0	copy fasta	BLM	chr15	90712346	90821166
BLNK_chr10_96184171_96276569	1/1	a0001	456	315	81	63	117	12	40	copy fasta	BLNK	chr10	96184171	96276569
BLNK_chr10_96184171_96276569	0/0	a0002	456	2	0	0	0	0	2	copy fasta	BLNK	chr10	96184171	96276569
BLNK_chr10_96184171_96276569	0/0	a0003	456	2	2	0	0	0	0	copy fasta	BLNK	chr10	96184171	96276569
BLNK_chr10_96184171_96276569	0/0	a0004	456	1	1	0	0	0	0	copy fasta	BLNK	chr10	96184171	96276569
BLNK_chr10_96184171_96276569	0/0	a0005	456	1	0	0	1	0	0	copy fasta	BLNK	chr10	96184171	96276569
BLNK_chr10_96184171_96276569	0/0	a0006	456	1	0	1	0	0	0	copy fasta	BLNK	chr10	96184171	96276569
BLOC1S1_chr12_55711046_55724703	1/1	a0001	153	409	94	74	185	14	40	copy fasta	BLOC1S1	chr12	55711046	55724703
BLOC1S1_chr12_55711046_55724703	0/0	a0002	153	1	0	0	1	0	0	copy fasta	BLOC1S1	chr12	55711046	55724703
BLOC1S2_chr10_100268293_100291680	1/1	a0001	142	332	74	62	142	13	39	copy fasta	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	a0002	142	45	17	8	16	1	3	copy fasta	BLOC1S2	chr10	100268293	100291680
BLOC1S2_chr10_100268293_100291680	0/0	a0003	142	1	1	0	0	0	0	copy fasta	BLOC1S2	chr10	100268293	100291680