JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TMEM214_chr2_27027965_27046694	0/0	a0008	689	1	1	0	0	0	0	copy fasta	TMEM214	chr2	27027965	27046694
TMEM214_chr2_27027965_27046694	0/0	a0009	689	1	0	1	0	0	0	copy fasta	TMEM214	chr2	27027965	27046694
TMEM214_chr2_27027965_27046694	0/0	a0010	689	1	0	0	1	0	0	copy fasta	TMEM214	chr2	27027965	27046694
TMEM214_chr2_27027965_27046694	0/0	a0011	689	1	0	0	0	1	0	copy fasta	TMEM214	chr2	27027965	27046694
TMEM215_chr9_32778540_32794201	1/1	a0001	235	410	91	78	189	12	38	copy fasta	TMEM215	chr9	32778540	32794201
TMEM215_chr9_32778540_32794201	0/0	a0002	235	2	0	2	0	0	0	copy fasta	TMEM215	chr9	32778540	32794201
TMEM215_chr9_32778540_32794201	0/0	a0003	235	2	2	0	0	0	0	copy fasta	TMEM215	chr9	32778540	32794201
TMEM215_chr9_32778540_32794201	0/0	a0004	235	1	1	0	0	0	0	copy fasta	TMEM215	chr9	32778540	32794201
TMEM215_chr9_32778540_32794201	0/0	a0005	235	1	0	0	1	0	0	copy fasta	TMEM215	chr9	32778540	32794201
TMEM216_chr11_61387587_61403846	1/1	a0001	145	265	84	44	101	8	26	copy fasta	TMEM216	chr11	61387587	61403846
TMEM216_chr11_61387587_61403846	0/0	a0002	145	2	0	2	0	0	0	copy fasta	TMEM216	chr11	61387587	61403846
TMEM216_chr11_61387587_61403846	0/0	a0003	145	2	0	0	0	0	2	copy fasta	TMEM216	chr11	61387587	61403846
TMEM216_chr11_61387587_61403846	0/0	a0004	145	1	0	0	1	0	0	copy fasta	TMEM216	chr11	61387587	61403846
TMEM217B_chr6_37207181_37263144	0/1	a0001	170	121	14	34	44	5	23	copy fasta	TMEM217B	chr6	37207181	37263144
TMEM217B_chr6_37207181_37263144	0/0	a0002	170	68	28	20	8	3	9	copy fasta	TMEM217B	chr6	37207181	37263144
TMEM217B_chr6_37207181_37263144	1/0	a0003	170	57	25	14	9	2	6	copy fasta	TMEM217B	chr6	37207181	37263144
TMEM217B_chr6_37207181_37263144	0/0	a0004	170	9	9	0	0	0	0	copy fasta	TMEM217B	chr6	37207181	37263144
TMEM217B_chr6_37207181_37263144	0/0	a0005	170	6	6	0	0	0	0	copy fasta	TMEM217B	chr6	37207181	37263144
TMEM217B_chr6_37207181_37263144	0/0	a0006	170	5	5	0	0	0	0	copy fasta	TMEM217B	chr6	37207181	37263144
TMEM217B_chr6_37207181_37263144	0/0	a0007	170	2	2	0	0	0	0	copy fasta	TMEM217B	chr6	37207181	37263144
TMEM217B_chr6_37207181_37263144	0/0	a0008	170	1	0	0	1	0	0	copy fasta	TMEM217B	chr6	37207181	37263144
TMEM217B_chr6_37207181_37263144	0/0	a0009	170	1	1	0	0	0	0	copy fasta	TMEM217B	chr6	37207181	37263144
TMEM217_chr6_37207181_37263144	1/1	a0001	211	282	90	68	74	10	38	copy fasta	TMEM217	chr6	37207181	37263144
TMEM218_chr11_125089389_125116626	1/1	a0001	115	437	93	84	192	16	50	copy fasta	TMEM218	chr11	125089389	125116626
TMEM218_chr11_125089389_125116626	0/0	a0002	115	1	1	0	0	0	0	copy fasta	TMEM218	chr11	125089389	125116626
TMEM219_chr16_29957079_29978048	1/1	a0001	240	361	87	67	154	14	37	copy fasta	TMEM219	chr16	29957079	29978048
TMEM219_chr16_29957079_29978048	0/0	a0002	240	5	5	0	0	0	0	copy fasta	TMEM219	chr16	29957079	29978048
TMEM219_chr16_29957079_29978048	0/0	a0003	240	1	0	1	0	0	0	copy fasta	TMEM219	chr16	29957079	29978048
TMEM219_chr16_29957079_29978048	0/0	a0004	240	1	0	0	0	0	1	copy fasta	TMEM219	chr16	29957079	29978048
TMEM220_chr17_10708295_10735023	1/1	a0001	160	397	93	64	188	14	36	copy fasta	TMEM220	chr17	10708295	10735023
TMEM220_chr17_10708295_10735023	0/0	a0002	160	3	0	0	2	0	1	copy fasta	TMEM220	chr17	10708295	10735023
TMEM220_chr17_10708295_10735023	0/0	a0003	160	2	1	1	0	0	0	copy fasta	TMEM220	chr17	10708295	10735023
TMEM220_chr17_10708295_10735023	0/0	a0004	160	1	0	0	0	0	1	copy fasta	TMEM220	chr17	10708295	10735023
TMEM220_chr17_10708295_10735023	0/0	a0005	160	1	0	1	0	0	0	copy fasta	TMEM220	chr17	10708295	10735023
TMEM221_chr19_17430509_17453668	0/1	a0001	291	241	69	50	77	16	28	copy fasta	TMEM221	chr19	17430509	17453668
TMEM221_chr19_17430509_17453668	0/0	a0002	291	115	12	26	64	0	13	copy fasta	TMEM221	chr19	17430509	17453668
TMEM221_chr19_17430509_17453668	1/0	a0003	291	49	1	2	39	0	6	copy fasta	TMEM221	chr19	17430509	17453668
TMEM221_chr19_17430509_17453668	0/0	a0004	291	7	6	0	1	0	0	copy fasta	TMEM221	chr19	17430509	17453668
TMEM221_chr19_17430509_17453668	0/0	a0005	291	3	1	2	0	0	0	copy fasta	TMEM221	chr19	17430509	17453668
TMEM221_chr19_17430509_17453668	0/0	a0006	291	2	2	0	0	0	0	copy fasta	TMEM221	chr19	17430509	17453668
TMEM221_chr19_17430509_17453668	0/0	a0007	291	2	2	0	0	0	0	copy fasta	TMEM221	chr19	17430509	17453668
TMEM221_chr19_17430509_17453668	0/0	a0008	291	1	1	0	0	0	0	copy fasta	TMEM221	chr19	17430509	17453668
TMEM221_chr19_17430509_17453668	0/0	a0009	291	1	0	0	0	0	1	copy fasta	TMEM221	chr19	17430509	17453668
TMEM221_chr19_17430509_17453668	0/0	a0010	291	1	0	0	1	0	0	copy fasta	TMEM221	chr19	17430509	17453668
TMEM222_chr1_27317163_27341400	1/1	a0001	208	365	94	68	151	15	35	copy fasta	TMEM222	chr1	27317163	27341400
TMEM222_chr1_27317163_27341400	0/0	a0002	208	4	0	2	0	1	1	copy fasta	TMEM222	chr1	27317163	27341400
TMEM222_chr1_27317163_27341400	0/0	a0003	208	2	0	0	0	2	0	copy fasta	TMEM222	chr1	27317163	27341400
TMEM222_chr1_27317163_27341400	0/0	a0004	208	1	0	0	1	0	0	copy fasta	TMEM222	chr1	27317163	27341400
TMEM223_chr11_62784971_62797006	1/1	a0001	202	337	73	63	152	15	32	copy fasta	TMEM223	chr11	62784971	62797006
TMEM223_chr11_62784971_62797006	0/0	a0002	202	57	15	5	34	2	1	copy fasta	TMEM223	chr11	62784971	62797006