JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TMEM223_chr11_62784971_62797006	0/0	a0003	202	8	7	1	0	0	0	copy fasta	TMEM223	chr11	62784971	62797006
TMEM223_chr11_62784971_62797006	0/0	a0004	202	3	0	0	3	0	0	copy fasta	TMEM223	chr11	62784971	62797006
TMEM223_chr11_62784971_62797006	0/0	a0005	202	2	1	0	0	1	0	copy fasta	TMEM223	chr11	62784971	62797006
TMEM223_chr11_62784971_62797006	0/0	a0006	202	1	0	1	0	0	0	copy fasta	TMEM223	chr11	62784971	62797006
TMEM223_chr11_62784971_62797006	0/0	a0007	202	1	0	0	1	0	0	copy fasta	TMEM223	chr11	62784971	62797006
TMEM223_chr11_62784971_62797006	0/0	a0008	30	1	0	0	0	0	1	copy fasta	TMEM223	chr11	62784971	62797006
TMEM225B_chr7_99593267_99616045	1/1	a0001	221	361	91	54	160	14	40	copy fasta	TMEM225B	chr7	99593267	99616045
TMEM225B_chr7_99593267_99616045	0/0	a0002	221	1	1	0	0	0	0	copy fasta	TMEM225B	chr7	99593267	99616045
TMEM225_chr11_123877920_123890670	0/0	a0001	225	380	88	65	176	10	41	copy fasta	TMEM225	chr11	123877920	123890670
TMEM225_chr11_123877920_123890670	0/0	a0002	225	54	0	10	38	2	4	copy fasta	TMEM225	chr11	123877920	123890670
TMEM225_chr11_123877920_123890670	0/0	a0003	225	15	1	4	7	1	2	copy fasta	TMEM225	chr11	123877920	123890670
TMEM225_chr11_123877920_123890670	0/0	a0004	225	2	0	0	2	0	0	copy fasta	TMEM225	chr11	123877920	123890670
TMEM225_chr11_123877920_123890670	0/0	a0005	225	2	2	0	0	0	0	copy fasta	TMEM225	chr11	123877920	123890670
TMEM225_chr11_123877920_123890670	0/0	a0006	9	1	0	1	0	0	0	copy fasta	TMEM225	chr11	123877920	123890670
TMEM225_chr11_123877920_123890670	0/0	a0007	225	1	0	0	0	1	0	copy fasta	TMEM225	chr11	123877920	123890670
TMEM225_chr11_123877920_123890670	0/0	a0008	225	1	1	0	0	0	0	copy fasta	TMEM225	chr11	123877920	123890670
TMEM225_chr11_123877920_123890670	0/0	a0009	225	1	1	0	0	0	0	copy fasta	TMEM225	chr11	123877920	123890670
TMEM225_chr11_123877920_123890670	0/0	a0010	225	1	0	0	0	0	1	copy fasta	TMEM225	chr11	123877920	123890670
TMEM225_chr11_123877920_123890670	0/0	a0011	225	1	1	0	0	0	0	copy fasta	TMEM225	chr11	123877920	123890670
TMEM225_chr11_123877920_123890670	0/0	a0012	225	1	0	0	1	0	0	copy fasta	TMEM225	chr11	123877920	123890670
TMEM229A_chr7_124025921_124038067	1/1	a0001	380	291	49	55	135	14	36	copy fasta	TMEM229A	chr7	124025921	124038067
TMEM229A_chr7_124025921_124038067	0/0	a0002	378	33	23	6	0	2	2	copy fasta	TMEM229A	chr7	124025921	124038067
TMEM229A_chr7_124025921_124038067	0/0	a0003	379	28	11	0	12	0	5	copy fasta	TMEM229A	chr7	124025921	124038067
TMEM229A_chr7_124025921_124038067	0/0	a0004	381	5	0	0	5	0	0	copy fasta	TMEM229A	chr7	124025921	124038067
TMEM229A_chr7_124025921_124038067	0/0	a0005	378	2	1	1	0	0	0	copy fasta	TMEM229A	chr7	124025921	124038067
TMEM229A_chr7_124025921_124038067	0/0	a0006	379	1	0	0	0	0	1	copy fasta	TMEM229A	chr7	124025921	124038067
TMEM229A_chr7_124025921_124038067	0/0	a0007	378	1	1	0	0	0	0	copy fasta	TMEM229A	chr7	124025921	124038067
TMEM229A_chr7_124025921_124038067	0/0	a0008	380	1	0	0	1	0	0	copy fasta	TMEM229A	chr7	124025921	124038067
TMEM229A_chr7_124025921_124038067	0/0	a0009	380	1	0	0	1	0	0	copy fasta	TMEM229A	chr7	124025921	124038067
TMEM229A_chr7_124025921_124038067	0/0	a0010	379	1	1	0	0	0	0	copy fasta	TMEM229A	chr7	124025921	124038067
TMEM229B_chr14_67465269_67493721	1/1	a0001	167	442	100	82	198	18	42	copy fasta	TMEM229B	chr14	67465269	67493721
TMEM230_chr20_5094850_5118076	1/1	a0001	183	403	88	74	188	18	33	copy fasta	TMEM230	chr20	5094850	5118076
TMEM230_chr20_5094850_5118076	0/0	a0002	183	1	0	0	0	0	1	copy fasta	TMEM230	chr20	5094850	5118076
TMEM231_chr16_75531741_75561252	1/1	a0001	316	238	73	52	63	17	31	copy fasta	TMEM231	chr16	75531741	75561252
TMEM231_chr16_75531741_75561252	0/0	a0002	316	123	6	28	71	1	17	copy fasta	TMEM231	chr16	75531741	75561252
TMEM231_chr16_75531741_75561252	0/0	a0003	316	4	4	0	0	0	0	copy fasta	TMEM231	chr16	75531741	75561252
TMEM231_chr16_75531741_75561252	0/0	a0004	316	2	2	0	0	0	0	copy fasta	TMEM231	chr16	75531741	75561252
TMEM231_chr16_75531741_75561252	0/0	a0005	316	1	1	0	0	0	0	copy fasta	TMEM231	chr16	75531741	75561252
TMEM232_chr5_110414496_110731671	1/0	a0001	657	176	42	31	79	8	15	copy fasta	TMEM232	chr5	110414496	110731671
TMEM232_chr5_110414496_110731671	0/0	a0002	606	18	0	5	11	2	0	copy fasta	TMEM232	chr5	110414496	110731671
TMEM232_chr5_110414496_110731671	0/0	a0003	657	13	12	1	0	0	0	copy fasta	TMEM232	chr5	110414496	110731671
TMEM232_chr5_110414496_110731671	0/0	a0004	657	5	3	2	0	0	0	copy fasta	TMEM232	chr5	110414496	110731671
TMEM232_chr5_110414496_110731671	0/0	a0005	657	5	5	0	0	0	0	copy fasta	TMEM232	chr5	110414496	110731671
TMEM232_chr5_110414496_110731671	0/0	a0006	657	4	4	0	0	0	0	copy fasta	TMEM232	chr5	110414496	110731671
TMEM232_chr5_110414496_110731671	0/0	a0007	657	4	3	1	0	0	0	copy fasta	TMEM232	chr5	110414496	110731671
TMEM232_chr5_110414496_110731671	0/0	a0008	657	3	3	0	0	0	0	copy fasta	TMEM232	chr5	110414496	110731671
TMEM232_chr5_110414496_110731671	0/0	a0009	657	2	2	0	0	0	0	copy fasta	TMEM232	chr5	110414496	110731671
TMEM232_chr5_110414496_110731671	0/0	a0010	657	2	2	0	0	0	0	copy fasta	TMEM232	chr5	110414496	110731671
TMEM232_chr5_110414496_110731671	0/0	a0011	657	2	1	0	1	0	0	copy fasta	TMEM232	chr5	110414496	110731671
TMEM232_chr5_110414496_110731671	0/0	a0012	657	2	2	0	0	0	0	copy fasta	TMEM232	chr5	110414496	110731671