JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
TMEM232_chr5_110414496_110731671	0/0	a0013	657	2	2	0	0	0	0	copy fasta	TMEM232	chr5	110414496	110731671
TMEM232_chr5_110414496_110731671	0/0	a0014	606	2	0	0	2	0	0	copy fasta	TMEM232	chr5	110414496	110731671
TMEM232_chr5_110414496_110731671	0/0	a0015	657	1	0	0	1	0	0	copy fasta	TMEM232	chr5	110414496	110731671
TMEM232_chr5_110414496_110731671	0/0	a0016	657	1	1	0	0	0	0	copy fasta	TMEM232	chr5	110414496	110731671
TMEM232_chr5_110414496_110731671	0/0	a0017	606	1	0	0	0	0	1	copy fasta	TMEM232	chr5	110414496	110731671
TMEM232_chr5_110414496_110731671	0/0	a0018	654	1	1	0	0	0	0	copy fasta	TMEM232	chr5	110414496	110731671
TMEM232_chr5_110414496_110731671	0/1	a0019	657	1	0	0	0	0	0	copy fasta	TMEM232	chr5	110414496	110731671
TMEM232_chr5_110414496_110731671	0/0	a0020	657	1	1	0	0	0	0	copy fasta	TMEM232	chr5	110414496	110731671
TMEM232_chr5_110414496_110731671	0/0	a0021	657	1	1	0	0	0	0	copy fasta	TMEM232	chr5	110414496	110731671
TMEM232_chr5_110414496_110731671	0/0	a0022	657	1	1	0	0	0	0	copy fasta	TMEM232	chr5	110414496	110731671
TMEM232_chr5_110414496_110731671	0/0	a0023	657	1	1	0	0	0	0	copy fasta	TMEM232	chr5	110414496	110731671
TMEM232_chr5_110414496_110731671	0/0	a0024	657	1	1	0	0	0	0	copy fasta	TMEM232	chr5	110414496	110731671
TMEM233_chr12_119588774_119648075	1/1	a0001	109	305	90	53	112	12	36	copy fasta	TMEM233	chr12	119588774	119648075
TMEM233_chr12_119588774_119648075	0/0	a0002	109	2	0	2	0	0	0	copy fasta	TMEM233	chr12	119588774	119648075
TMEM233_chr12_119588774_119648075	0/0	a0003	109	1	0	1	0	0	0	copy fasta	TMEM233	chr12	119588774	119648075
TMEM234_chr1_32211200_32227353	1/1	a0001	140	397	94	70	181	14	36	copy fasta	TMEM234	chr1	32211200	32227353
TMEM234_chr1_32211200_32227353	0/0	a0002	133	2	0	0	2	0	0	copy fasta	TMEM234	chr1	32211200	32227353
TMEM234_chr1_32211200_32227353	0/0	a0003	140	1	0	0	1	0	0	copy fasta	TMEM234	chr1	32211200	32227353
TMEM235_chr17_78226631_78245987	1/1	a0001	223	433	88	78	209	16	40	copy fasta	TMEM235	chr17	78226631	78245987
TMEM235_chr17_78226631_78245987	0/0	a0002	223	26	7	7	0	2	10	copy fasta	TMEM235	chr17	78226631	78245987
TMEM235_chr17_78226631_78245987	0/0	a0003	223	8	5	3	0	0	0	copy fasta	TMEM235	chr17	78226631	78245987
TMEM235_chr17_78226631_78245987	0/0	a0004	223	1	0	0	1	0	0	copy fasta	TMEM235	chr17	78226631	78245987
TMEM236_chr10_17747201_17805868	1/1	a0001	351	272	59	55	119	8	29	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	a0002	351	62	22	8	23	4	5	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	a0003	351	61	0	15	34	6	6	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	a0004	351	5	5	0	0	0	0	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	a0005	351	2	2	0	0	0	0	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	a0006	351	2	2	0	0	0	0	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	a0007	351	1	0	1	0	0	0	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	a0008	351	1	1	0	0	0	0	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	a0009	351	1	1	0	0	0	0	copy fasta	TMEM236	chr10	17747201	17805868
TMEM236_chr10_17747201_17805868	0/0	a0010	351	1	0	1	0	0	0	copy fasta	TMEM236	chr10	17747201	17805868
TMEM237_chr2_201615186_201648503	1/1	a0001	408	391	69	69	194	15	42	copy fasta	TMEM237	chr2	201615186	201648503
TMEM237_chr2_201615186_201648503	0/0	a0002	408	24	20	3	0	1	0	copy fasta	TMEM237	chr2	201615186	201648503
TMEM237_chr2_201615186_201648503	0/0	a0003	408	2	2	0	0	0	0	copy fasta	TMEM237	chr2	201615186	201648503
TMEM237_chr2_201615186_201648503	0/0	a0004	408	1	1	0	0	0	0	copy fasta	TMEM237	chr2	201615186	201648503
TMEM237_chr2_201615186_201648503	0/0	a0005	408	1	1	0	0	0	0	copy fasta	TMEM237	chr2	201615186	201648503
TMEM237_chr2_201615186_201648503	0/0	a0006	408	1	1	0	0	0	0	copy fasta	TMEM237	chr2	201615186	201648503
TMEM238L_chr17_10789908_10809099	0/1	a0001	79	280	29	58	154	14	24	copy fasta	TMEM238L	chr17	10789908	10809099
TMEM238L_chr17_10789908_10809099	1/0	a0002	79	188	69	28	64	4	22	copy fasta	TMEM238L	chr17	10789908	10809099
TMEM238L_chr17_10789908_10809099	0/0	a0003	79	1	1	0	0	0	0	copy fasta	TMEM238L	chr17	10789908	10809099
TMEM238L_chr17_10789908_10809099	0/0	a0004	79	1	1	0	0	0	0	copy fasta	TMEM238L	chr17	10789908	10809099
TMEM238_chr19_55374244_55389292	0/1	a0001	176	203	18	44	86	13	41	copy fasta	TMEM238	chr19	55374244	55389292
TMEM238_chr19_55374244_55389292	1/0	a0002	176	123	76	15	24	1	6	copy fasta	TMEM238	chr19	55374244	55389292
TMEM238_chr19_55374244_55389292	0/0	a0003	176	1	0	0	0	0	1	copy fasta	TMEM238	chr19	55374244	55389292
TMEM238_chr19_55374244_55389292	0/0	a0004	176	1	0	1	0	0	0	copy fasta	TMEM238	chr19	55374244	55389292
TMEM239_chr20_2811364_2823062	1/1	a0001	152	391	90	74	172	12	41	copy fasta	TMEM239	chr20	2811364	2823062
TMEM239_chr20_2811364_2823062	0/0	a0002	152	5	5	0	0	0	0	copy fasta	TMEM239	chr20	2811364	2823062
TMEM239_chr20_2811364_2823062	0/0	a0003	152	2	2	0	0	0	0	copy fasta	TMEM239	chr20	2811364	2823062
TMEM239_chr20_2811364_2823062	0/0	a0004	152	1	1	0	0	0	0	copy fasta	TMEM239	chr20	2811364	2823062